PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677824.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 298aa MW: 32994 Da PI: 8.7234

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.2	2.2e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++G+g +W + +++ g++R++k+c++rw++yl XP_020677824.1 14 KGPWSAEEDSKLKGFIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	33.9	7.3e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ Ed + +++ G++ W+ Ia+ ++ gRt++++k++w++ XP_020677824.1 69 GEFSDAEDRTICTLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 7899***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MGRAPCCDKA NVKKGPWSAE EDSKLKGFIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDAEDRTIC TLFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLGI 120 SSSPKKSSIH HQEQQNQQLL FSSPSPSLFS NPYININATS TTPLHKPFLS GFNHQANLVP 180 ISPEAFSGSS TSSSSSLFQA SQYQLKESRS SAVLVFGGDQ AGSCTQISQN MSFDNFMLYG 240 STGFQDFSGL QSSAPLEECS SYGFDEIKQI LMNSNNEFFL EDQTVGGCKA QWRSMDTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-69	MYB family protein