PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020677772.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 352aa    MW: 40265.6 Da    PI: 6.0036
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020677772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.2e-21953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e+  +rq+t+skRr+gi KKA ELSvLCd+++++++fs+tgk
  XP_020677772.1  9 KRLESMNRRQITYSKRRAGIAKKATELSVLCDIDILLLMFSPTGK 53
                    68899**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MGRVKLTIKR LESMNRRQIT YSKRRAGIAK KATELSVLCD IDILLLMFSP TGKPTICLGE  60
HSKFEDVITK FAQLTPQERT KRKLESLEVL KKTFKKLDHD VNIPDFLGSS NQIIEELSSH  120
LLNLKSQLFE TQRKLSDWTD PDNVGSIEQI TQMEHTLLEA LNRIQMQKIY LIRNQLLQLD  180
YPGEFLNAMQ LHVNSSNEQQ PSNMQWQHHG DDQSFMVSGA PSLLPQRNNM CSTETSLQDY  240
PDYYGIEEQV VCSNNGQEEP MNGMGHNSCL QLQLGAQHPY QSYDMNLFAN KFQPNGEVSL  300
QANQVDFQFN GFKPPAKEVT TELQNWVDAT KSCVRPMFED PVYSQGLSTF GH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-79M-type_MADS family protein