PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020677589.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 244aa MW: 27318.1 Da PI: 7.5493 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.5e-11 | 174 | 198 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + ++G+C+y +rC+FaHg XP_020677589.1 174 KTELCNKWGEMGICPYAERCQFAHG 198 9***********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence |
MAFSANSGDQ FESQKQFMIL ELQRLIESYN DAFWQLHHTI LHVDSLRKEH LLLSAENLKL 60 LSLIQEKESS SASPITEILP ASSTIVTGFD GKLQPANLES DTVECIPDPT RNILPKCISI 120 RSAGFLAGRH LSPRGRGMSS TRTIQPLRLR LPVASSIQDN EEVEVEAYSQ GTTKTELCNK 180 WGEMGICPYA ERCQFAHGLE ELRPVIRHPR YKTQFCRMLS SGGGCPYGHR CHFRHAAPPA 240 YHGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-42 | C3H family protein |