PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020677583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GRAS | ||||||||
Protein Properties | Length: 453aa MW: 49253.7 Da PI: 5.9799 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 325.6 | 9.6e-100 | 68 | 429 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lLl+cAe v+ ++l+ a +lL ++ l+sp g++ +R+aayf AL+ar+++s + y+ lp ++ + + + +++l++ ++P++kfsh+ XP_020677583.1 68 LSLLLQCAESVAVDNLSDALTLLPEITSLSSPFGSSPERVAAYFSDALRARILSSYLSSYSPLPLKTLTV--THRIPRSFHLLNSLTPLIKFSHF 160 689***************************************************9999999999999984..4444568999************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.. 189 t NqaI +++++ +r+Hi+Dfdi+qGlQWp L++ LasRp++ s+RiTg+g+ +++ le+tg+rLa+fA++l++pf+f++l + +++dl XP_020677583.1 161 TSNQAIFQSIHSFSRLHIVDFDIMQGLQWPGLFHILASRPRPIESIRITGIGP----DSDLLEATGRRLADFAASLNLPFQFTPL-EGKIADLat 250 *****************************************************....9**************************6.667777734 PP GRAS 190 eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282 ++ ++r + Ea++V++ h l+d ++s +++ sl+P++++vveq++ + + + Fl rf+eal+yysalfd++ + + eer XP_020677583.1 251 DFTSFRHRDpAEATVVHWTQ--HCLYDVTGSDLA----AAQFLLSLRPRLFTVVEQDLGRgSCGGFLGRFVEALHYYSALFDAIGDG-GGGGEER 338 6667766557********99..777766777666....6678889**************97778********************877.6888*** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vEr +lg ei+n+va g +r+ + + +e+W + l+++GF+pv+l a+qa+lll +v+++gy++ ee g l lgWkd +L+++SaWr XP_020677583.1 339 WEVERGVLGGEIRNIVAVGGPKRTGEVR-VERWGDELRRVGFRPVSLAGCPAAQASLLLGMVPWKGYTLAEEGGRLKLGWKDLSLLTASAWR 429 **********************998887.9*************************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence |
MLQSLLPQSP INPTATSSSE AAPVTSKRSS SPSSSDDPRP LKHPNLDIST APPAADSPEI 60 ESRGLRLLSL LLQCAESVAV DNLSDALTLL PEITSLSSPF GSSPERVAAY FSDALRARIL 120 SSYLSSYSPL PLKTLTVTHR IPRSFHLLNS LTPLIKFSHF TSNQAIFQSI HSFSRLHIVD 180 FDIMQGLQWP GLFHILASRP RPIESIRITG IGPDSDLLEA TGRRLADFAA SLNLPFQFTP 240 LEGKIADLAT DFTSFRHRDP AEATVVHWTQ HCLYDVTGSD LAAAQFLLSL RPRLFTVVEQ 300 DLGRGSCGGF LGRFVEALHY YSALFDAIGD GGGGGEERWE VERGVLGGEI RNIVAVGGPK 360 RTGEVRVERW GDELRRVGFR PVSLAGCPAA QASLLLGMVP WKGYTLAEEG GRLKLGWKDL 420 SLLTASAWRP ANSTGEEEED GVEEWDKSGR ASL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-133 | GRAS family protein |