PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020677354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21143.8 Da PI: 4.8021 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.6 | 3.8e-24 | 20 | 66 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krie++ +rqv fskRr+g++KKA+ELS+LC++evav+ifs+ gk y XP_020677354.1 20 KRIEEEQKRQVCFSKRRQGLFKKASELSTLCGVEVAVVIFSPAGKPY 66 79******************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MNPAEVKKKR GKGRRKIEIK RIEEEQKRQV CFSKRRQGLF KKASELSTLC GVEVAVVIFS 60 PAGKPYFFGQ PSIDHVLNHF LNAGPNPSNQ DEPMNHDQSA GDQSFWWDID PHSMGVVELR 120 EYQEILAEQQ SVVIQAAQQC YLQAPPEAAM EQIEALPHTY PEVGEDDYFL CWQQDYDFQD 180 IVPF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-21 | M-type_MADS family protein |