PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020676892.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 530aa MW: 58260.8 Da PI: 7.3914

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020676892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.9e-32	211	268	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ +++++ei+Y+g+H h+k XP_020676892.1 211 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNF-EGQITEIVYKGTHSHPK 268 8**************************************.*************85 PP
2	WRKY	104.6	5.2e-33	384	442	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d + v++tYeg+Hnh+ XP_020676892.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTMGCPVRKHVERASHDLRSVITTYEGKHNHD 442 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MASSSGSVEA SSASFSFASP YEASFSDLLA GEGSANDRLT GLTVRGFGDR GGGGGGIPKF 60 KSIPPPSLPI SPPPISPSSY FAIPAGLSPA ELLDSPVLLS SNNQILFSPT TGTFPSKTFN 120 WRGINSGSND NEGREEENRA YYDFSFQNQN KRSSFQQQRD AFKGSQQPWN HQESNIKTEI 180 PAANSSEMQT LQLNTQVNSN NNVTREQRKS DDGYNWRKYG QKQVKGSENP RSYYKCTFPN 240 CPTKKKVERN FEGQITEIVY KGTHSHPKPQ STRRNSSSSQ QPVHPLAIVA VGSDAAEHSH 300 GGRLGASNLD SVATPDDSSV SFGEEDVDLS SHKSNLAGDE LDEEEPDAKR LRREAENDGA 360 SAAGNKTVRE PRVVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTMGCPVRKH 420 VERASHDLRS VITTYEGKHN HDVPAARGSR PPEDNSHGTT TAIRPSAISA APRNSLFGQR 480 LDANFQSYNG PFTLDMLSTQ RNYGSNYMNQ QQLKTKEEPK DDMFLESLLI

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MASSSGSVEA SSASFSFASP YEASFSDLLA GEGSANDRLT GLTVRGFGDR GGGGGGIPKF  60
KSIPPPSLPI SPPPISPSSY FAIPAGLSPA ELLDSPVLLS SNNQILFSPT TGTFPSKTFN  120
WRGINSGSND NEGREEENRA YYDFSFQNQN KRSSFQQQRD AFKGSQQPWN HQESNIKTEI  180
PAANSSEMQT LQLNTQVNSN NNVTREQRKS DDGYNWRKYG QKQVKGSENP RSYYKCTFPN  240
CPTKKKVERN FEGQITEIVY KGTHSHPKPQ STRRNSSSSQ QPVHPLAIVA VGSDAAEHSH  300
GGRLGASNLD SVATPDDSSV SFGEEDVDLS SHKSNLAGDE LDEEEPDAKR LRREAENDGA  360
SAAGNKTVRE PRVVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTMGCPVRKH  420
VERASHDLRS VITTYEGKHN HDVPAARGSR PPEDNSHGTT TAIRPSAISA APRNSLFGQR  480
LDANFQSYNG PFTLDMLSTQ RNYGSNYMNQ QQLKTKEEPK DDMFLESLLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-112	WRKY family protein