PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676850.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 393aa    MW: 44391.6 Da    PI: 4.9113
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.49.1e-99223913374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d +++q++L+ l+elasp+gd  q++a+yf++AL  ++++s+++ y++l + ++++++ +++ ++   f+evsP+ +f+h++
  XP_020676850.1  22 NLLKECAKAISDKDSAKIQHILWMLNELASPYGDCEQKIASYFLQALFCKVTESGEQSYRTLVSAAEKSHSFESARKVILKFQEVSPWTTFGHVA 116
                     7899**********************************************************9999886555555555555************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlel 191
                     aN+aIlea+ege ++HiiD++ ++++QWp+Ll++La+R++++p+l++ +v+         ++e+g+r++kfA+ +gvpfefnv+  + +l++l+ 
  XP_020676850.1 117 ANSAILEALEGEPKLHIIDISNTYCTQWPTLLESLATRSDETPHLKLSVVVIGGGPGGSVMKEIGQRMEKFARLMGVPFEFNVINRNsSLSELRE 211
                     ***************************************************955449**************************965569****** PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                     +e+ vk++Ea+aVn++ +  r+        ++r+e+++++ sl+P+vv+vve+e+d   n+ +F++ f e+l++ys++f++le+++ ++s+er +
  XP_020676850.1 212 KEFGVKEDEAVAVNCIGAFRRVG------VERREEFVRMISSLRPRVVTVVEEEVDFssNRDDFFKCFEECLRFYSMFFEMLEESFVPTSNERLM 300
                     *****************999998......44588********************99877999********************************* PP

            GRAS 285 vErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSaWr 374
                     +Ere  +r+i  ++ac +++   er+e+  +W +rl+ea F ++++se+a +++k+ll++++ ++       +s  l+l+Wk++p+v++S+W+
  XP_020676850.1 301 LERE-CSRSILGLLACGEDAeCAERREKGTQWCKRLSEA-FVAASFSEDAIDDVKALLKRYQlGWSlLPASGDSSGLFLTWKEEPVVWASVWK 391
                     ****.89*********6654389**************98.**********************5433234447799999**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    
MQNSNFFLQQ GDPSVANKWA ANLLKECAKA ISDKDSAKIQ HILWMLNELA SPYGDCEQKI  60
ASYFLQALFC KVTESGEQSY RTLVSAAEKS HSFESARKVI LKFQEVSPWT TFGHVAANSA  120
ILEALEGEPK LHIIDISNTY CTQWPTLLES LATRSDETPH LKLSVVVIGG GPGGSVMKEI  180
GQRMEKFARL MGVPFEFNVI NRNSSLSELR EKEFGVKEDE AVAVNCIGAF RRVGVERREE  240
FVRMISSLRP RVVTVVEEEV DFSSNRDDFF KCFEECLRFY SMFFEMLEES FVPTSNERLM  300
LERECSRSIL GLLACGEDAE CAERREKGTQ WCKRLSEAFV AASFSEDAID DVKALLKRYQ  360
LGWSLLPASG DSSGLFLTWK EEPVVWASVW KPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-139GRAS family protein