PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676477.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family AP2
Protein Properties Length: 487aa    MW: 52737.3 Da    PI: 7.3102
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17134183155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_020676477.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183
                     78*******************......55************************997 PP
2AP243.96e-14226276155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k++g
  XP_020676477.1 226 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKFNG 276
                     89********.7******5553..2.26**********99***********9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    
MWDLNGSPDN MVGSEGDEGE SSSQRKGKEP ESAVSTENSS SSAVVVEASD EGEDNSGDRE  60
VGKIFGISVT GGQQPFVTRQ FFPSGEAVAQ NCGDPPPRAH WAAVQFRPPE SAAAAAPSGQ  120
PMKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK  180
FRGVDADINF HLDDYEDDLK QMGNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE  240
ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKFNGKDAV TNFDASIYAD ELGCSTVQAE  300
HNLDLSLGSS APKISTANPM DEESSGCASS SGGADQRFLT TCRDVINTNT KLKLPENESR  360
VNFHLGHHME MLKHSSYIQA PQFALPPPQS VGFQFIRHQL SHPSSFHQYH PGGNLAAARS  420
SGDVHLSLAI DGGSSGSNWA PLPAVVGPQF SSPTAVVAAA SSGFPPQAVK SSHNWLHKNG  480
LQSLGRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.11e-110AP2 family protein