PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020676467.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

DBB

Protein Properties

Length: 290aa MW: 31825.4 Da PI: 5.6471

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020676467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.6e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ e++ C ++ lC +C ++ H H++vpl XP_020676467.1 4 QCNACEKAEAKVLCCADEAALCWECDEKVHAAnklagkHQRVPL 47 7*****************************66899999999986 PP
2	zf-B_box	30.2	9.5e-10	60	96	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 +kC+ ++e + +fC +++ lC++C ++ H H XP_020676467.1 60 VPKCDICQEASAYFFCLEDRAILCRNCDVSVHTAnpH 96 589****************************955563 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MKIQCNACEK AEAKVLCCAD EAALCWECDE KVHAANKLAG KHQRVPLIAA SSSSTSSYRV 60 PKCDICQEAS AYFFCLEDRA ILCRNCDVSV HTANPHVSIH QRFLLTGVQV GLESTGSAPS 120 VSKEQSSSAK GLTERSPKRP KSSPQAMSYS GEINEVYEDG RMEPLGTFFG GAPMAASITE 180 WPLDEFFRFT DFNQNYDFTD NGSSKADSGK LGSSDGSPLN LSPDEDREAE ECLVQVPEIP 240 SPPTSSGLNW PRNSHYLASE NAAFVPDIST LQNPYQARTR FPKRRRSWHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-87	DBB family protein