PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020676328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 35619.2 Da PI: 7.7339 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.6e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++G+g +W + ++++g++R++k+c++rw++yl XP_020676328.1 14 KGPWSPEEDAKLKSFIEEHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.3 | 7.1e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+++ +++ G++ W+ Ia+ ++ gRt++++k++w++ XP_020676328.1 69 GGFSEEEDQIICNLFVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence |
MGRAPCCDKA NVKKGPWSPE EDAKLKSFIE EHGTGGNWIA LPHKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDQIIC NLFVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RRDSSSTSQP RHLPNEKGCN PNPNPNIGSS LTLTSSALER LQLHMQLQGL NSPFSFYNNT 180 ALWPKFYPLG NDCKLFQTIS TDAITTTVYP LKLSQATMEP SEQANFSNSM ITSLQGSLGI 240 SSSSSSNLDI ELHDLLCGKE SQFFNEMESF KEMNIEEGMG WWGSNGLDEK SLFTSLDSTS 300 ALRSDFVLQE YRMGYDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-88 | MYB family protein |