PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020676225.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 218aa MW: 25163.6 Da PI: 7.6173 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 99 | 159 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +t+ ql++Le+ F++ +ps+++++e++++l ++t+ +V++WFqN+Ra+ kk XP_020676225.2 99 RQRWIPTSMQLQILEDIFRQgYGTPSKQKIAEITSELakhgHVTDVKVYNWFQNKRARSKK 159 89*****************99**************************************98 PP | |||||||
2 | Wus_type_Homeobox | 92.8 | 3.1e-30 | 98 | 161 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Pt+ Q++iLe+++++G tP+k++i +it+eL+++G+++d V++WFQN++aR+++kq XP_020676225.2 98 ARQRWIPTSMQLQILEDIFRQGYGTPSKQKIAEITSELAKHGHVTDVKVYNWFQNKRARSKKKQ 161 689***********************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence |
MAWERGGSSN MNHGRIYEEE RAMGDWQGIL DGVLYMKVMT DEQIEVLRRQ ISIYATICEQ 60 LVVMHRTFTS QQEALAGMKF GTMLYNPLVS AEVPKVAARQ RWIPTSMQLQ ILEDIFRQGY 120 GTPSKQKIAE ITSELAKHGH VTDVKVYNWF QNKRARSKKK QAESEAEIES SGRKKTKVEE 180 THESEDDASG LQYQMTTPRG ELFNYRNLAC DLKFEWSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-53 | WOX family protein |