PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676049.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 719aa    MW: 78145.7 Da    PI: 6.7697
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.61.2e-933457181374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..........sseelaalkl 83 
                     l+++L+e Ae v++g++  a+ +Larl+++ +sp g+p+ R a+yf+eAL+  +a+   + l+ + p+ + +++           ++ +l+a+k+
  XP_020676049.1 345 LIDQLFETAELVEAGNFISAHGILARLNHQlSSPLGKPLLRSAFYFKEALQVLVANsYNPPLVTSSPS-HHHRTPfttslftpldVVLKLSAYKT 438
                     5789************************998************************9444444444333.322222456788888899999***** PP

            GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                     fsevsP+l f+++t  qa+le++ +++++HiiDfdi+ G+QW +++++La+R+  + +p+l+iT+++s  +++  el+ t+e+La+fA+ l++pf
  XP_020676049.1 439 FSEVSPVLHFTNFTVTQALLEELGTADCIHIIDFDIGIGGQWSSFIHELAQRRrsSTAPRLKITAFVSLCAFHPLELHLTRENLAQFAADLNIPF 533
                     **************************************************88866889**********9999*********************** PP

            GRAS 177 efnvlvakrledlel.eeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     e+n+   ++le++++ e L+v+   +E +aVnl +     +          +++L+lvk+l Pk+v  v+q +d+++ +F ++fl+al+  + l+
  XP_020676049.1 534 EINI---SSLESFDPvEILAVSAgcNEIIAVNLPVGSALNP--------SFSTLLRLVKQLTPKIVMSVDQGCDRSDLPFSHHFLHALQSSMILL 617
                     ***9...455665541445666677*********9655554........3557****************************************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                     ds++a  +++ +  +k+Er++l+++i+n++  + ++      ++ +Wr  + +aGF pv++s+++++qa++ll++v+++g++ve++++sl+l+W+
  XP_020676049.1 618 DSIDAA-GSNMDMSNKIERFILQPKIENCIIGRYRA----ADKMLQWRTLFASAGFVPVQFSNFTEMQAECLLKRVQVRGFHVEKRQASLYLYWQ 707
                     ***999.7899********************99998....88999************************************************** PP

            GRAS 364 drpLvsvSaWr 374
                     + +Lvs+SaWr
  XP_020676049.1 708 RGELVSISAWR 718
                     **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    
MRGMPFSLSG KGALEAIAAQ ILGEEDKGGT FWSGCSHRKR KGEVLEPRSV LYHRRSPSPP  60
TSTSTLSSSL SSGGGGGGGG STETGGVAAV SENPSQRKEE WATELHPIAG SLEMSGIVSA  120
GEKCGIGADD WETMLTSSAA SPNQEQTFLR WIMGDIDDPS SASKHHHYHQ VPSQAPPVEF  180
DAGITVAGFG LVDPLLGFEP IGGIAGTTSS GGFYQGSRNI DGKKANFINP PSGMTFQEPT  240
DEKPQLFSPN LLQTNISPNP AFFLPSSSLT AATAQHQTSN LLSPHPKRHQ SMPHDSAFSI  300
PSLCAGQLQA YPYQLQQRLM KPRPSLAGND AASTAAMALQ QHQALIDQLF ETAELVEAGN  360
FISAHGILAR LNHQLSSPLG KPLLRSAFYF KEALQVLVAN SYNPPLVTSS PSHHHRTPFT  420
TSLFTPLDVV LKLSAYKTFS EVSPVLHFTN FTVTQALLEE LGTADCIHII DFDIGIGGQW  480
SSFIHELAQR RRSSTAPRLK ITAFVSLCAF HPLELHLTRE NLAQFAADLN IPFEINISSL  540
ESFDPVEILA VSAGCNEIIA VNLPVGSALN PSFSTLLRLV KQLTPKIVMS VDQGCDRSDL  600
PFSHHFLHAL QSSMILLDSI DAAGSNMDMS NKIERFILQP KIENCIIGRY RAADKMLQWR  660
TLFASAGFVP VQFSNFTEMQ AECLLKRVQV RGFHVEKRQA SLYLYWQRGE LVSISAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-91GRAS family protein