PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020675894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | CO-like | ||||||||
Protein Properties | Length: 419aa MW: 46136.3 Da PI: 6.1842 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18 | 6.1e-06 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++ ++ +C+++ lC C + H+ H++ XP_020675894.1 5 CDFCGGQRPMVYCRSDAASLCLACDRNVHSAnalsrrHSR 44 *****************************65677777766 PP | |||||||
2 | zf-B_box | 23 | 1.6e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++++ C + + lC++C ++H + H++++ XP_020675894.1 46 LLCDRCYSQPASIRCIEESISLCQSCDWNGHGNstsssgHKRQT 89 57*****************************5588999999876 PP | |||||||
3 | CCT | 65.6 | 1.4e-22 | 363 | 406 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k R FeKkirY+sRK++A+sR RvKGrFvk+ XP_020675894.1 363 RDNAVMRYKEKKKARMFEKKIRYASRKTRADSRRRVKGRFVKAG 406 899**************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence |
MGCLCDFCGG QRPMVYCRSD AASLCLACDR NVHSANALSR RHSRTLLCDR CYSQPASIRC 60 IEESISLCQS CDWNGHGNST SSSGHKRQTI RCYSGCPSAT ELARIWPFVL EFLPVEDSSC 120 EQGIMGLLSI NENSTSTHWG PPQQSSTSDM ADICRMNDVE KVNTTNVHIA SSSMGTAIPM 180 LCKTDQPADS IDSTTPKSSD GRTKKVANSE DDFYDGFAVD DELTFENYEE LFGASHAHSE 240 HLFDDVGIDS IFEKKENSAA NSNCQGEFVA EASSAVQVKS IQVKSSYDIS VDSVMPNQGA 300 KIDYNMSIST KQARSSLSRT FSSLTGESSA SDYQDCGMSS MLLVGEPPYH PTSSDISIQA 360 INRDNAVMRY KEKKKARMFE KKIRYASRKT RADSRRRVKG RFVKAGEAFD YDPLSQARA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-100 | CO-like family protein |