PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675761.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 275aa    MW: 30978.9 Da    PI: 6.8324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd++l+  +   G  +W+++++  g+ R++k+c++rw +yl
   XP_020675761.1 14 KGPWTTEEDKKLISFILNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.41.2e-1670111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ E++l +d++ qlG++ W++Ia+ ++ gRt++++k++w+++
   XP_020675761.1  70 LSESEEKLVIDLHSQLGNR-WSKIAANLP-GRTDNEIKNHWNTH 111
                      5899***************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MGRQPCCDKV GLKKGPWTTE EDKKLISFIL NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEKLVID LHSQLGNRWS KIAANLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPLTHKPLA SEEQLSHQSE HHEAPSAYSD LSTAANLHCP LDGPETFCTD EVPLMEPHEI  180
IVPCTPSATP CSSSSRSSSS TTKRTTWSSS SSSSSNSSVK AEEIQIPSME WPESVSFWGM  240
DDFMGWDFIS HDGEGKLSST DLFNQNQEQW KFELF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-86MYB family protein