PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675725.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YA

Protein Properties

Length: 433aa MW: 48768.4 Da PI: 10.1701

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675725.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.4	4.3e-32	273	329	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR++Rakle+++k+ k+rkpylheSRh+hA++R+Rg gGrF XP_020675725.2 273 EEPIYVNAKQYHAILRRREHRAKLESQSKT-VKTRKPYLHESRHQHAMKRARGIGGRF 329 69**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MFKRADFVLY FKQDFFNGLF YQFRENRSRR NKRGKRKEVG RSQGFRAWRH TLPASYLEII 60 VASIKDSVIH TVPSDNWKGS PMQNMSDKDS QHELVQSAYN YPSNGIPWWN SCGPHILLYP 120 TTANLYASMN TPVSNQIKQV ENQMLEQESS STQSSGSSHG ELSKESDDSP NEWCLSGQSG 180 SIQDKINDKG DEHAREKFKE GQTKPVFLEG KSQVFFRPTK FDSSQSLSYV PYAYADTQYT 240 GGLAAYGSHA VVHPQMIGMP PSRFALPVQP SGEEPIYVNA KQYHAILRRR EHRAKLESQS 300 KTVKTRKPYL HESRHQHAMK RARGIGGRFL NTKKPQEQQS QLSSKTAEVQ HLASSGDRHA 360 GRTIGLSNSI SAAPICPKIT SVSNSGGPRG IFQSQHHFGF SSSDRQSQFQ RNIHEGYDGL 420 FNNGPKPAVP VNR

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MFKRADFVLY FKQDFFNGLF YQFRENRSRR NKRGKRKEVG RSQGFRAWRH TLPASYLEII  60
VASIKDSVIH TVPSDNWKGS PMQNMSDKDS QHELVQSAYN YPSNGIPWWN SCGPHILLYP  120
TTANLYASMN TPVSNQIKQV ENQMLEQESS STQSSGSSHG ELSKESDDSP NEWCLSGQSG  180
SIQDKINDKG DEHAREKFKE GQTKPVFLEG KSQVFFRPTK FDSSQSLSYV PYAYADTQYT  240
GGLAAYGSHA VVHPQMIGMP PSRFALPVQP SGEEPIYVNA KQYHAILRRR EHRAKLESQS  300
KTVKTRKPYL HESRHQHAMK RARGIGGRFL NTKKPQEQQS QLSSKTAEVQ HLASSGDRHA  360
GRTIGLSNSI SAAPICPKIT SVSNSGGPRG IFQSQHHFGF SSSDRQSQFQ RNIHEGYDGL  420
FNNGPKPAVP VNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	1e-36	NF-YA family protein