PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020675690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 133aa MW: 15601.1 Da PI: 9.841 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.9 | 2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA EL +LCdaev +i+fs+t++ly+++s XP_020675690.1 10 RIDNTTTRQVTFSKRRNGLLKKARELAILCDAEVGLIVFSNTDRLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 16 | 5.1e-07 | 78 | 115 | 6 | 43 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedL 43 + ++++ + +q+e++ L++++ nLq++ R ++ +dL XP_020675690.1 78 LVMHSNSEIQFWQREATCLRQQLYNLQENYRLMQVQDL 115 45578999*********************999887776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence |
MGRGKIAIRR IDNTTTRQVT FSKRRNGLLK KARELAILCD AEVGLIVFSN TDRLYDFAST 60 SMKSVIERYS KIKEDRQLVM HSNSEIQFWQ REATCLRQQL YNLQENYRLM QVQDLMEDLP 120 LAVLLVPHQL ILN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 7e-56 | MIKC_MADS family protein |