PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675689.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 150aa MW: 17420.1 Da PI: 10.5031

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.6	2.6e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA EL +LCdaev +i+fs+t++ly+++s XP_020675689.1 10 RIDNTTTRQVTFSKRRNGLLKKARELAILCDAEVGLIVFSNTDRLYDFAS 59 8***********************************************86 PP
2	K-box	49.9	1.4e-17	78	140	6	69
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + ++++ + +q+e++ L++++ nLq++ R+l+G d++ L lk+Lq Le+qL+ sl+ i +kK XP_020675689.1 78 LVMHSNSEIQFWQREATCLRQQLYNLQENYRQLMG-DVNGLGLKDLQTLENQLKASLQAIHKKK 140 45578999*************************.69*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence
MGRGKIAIRR IDNTTTRQVT FSKRRNGLLK KARELAILCD AEVGLIVFSN TDRLYDFAST 60 SMKSVIERYS KIKEDRQLVM HSNSEIQFWQ REATCLRQQL YNLQENYRQL MGDVNGLGLK 120 DLQTLENQLK ASLQAIHKKK VFRSDTLSHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-64	MIKC_MADS family protein