PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675651.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 264aa MW: 30325.2 Da PI: 8.4574

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.5e-17	14	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT Ed ll ++k +G+g+Wkt +++ g+ R++k+c++rw +y XP_020675651.1 14 RGPWTSREDALLTSYIKNHGTGNWKTLPKRAGLLRCGKSCRLRWMNY 60 89****************************99**********9 PP
2	Myb_DNA-binding	51.1	3.1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++l+++++ +lG++ W++Ia +++ gRt++++k++w+ + XP_020675651.1 67 RGNISPEEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNGH 111 7899****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MGRAPCCSKV GLHRGPWTSR EDALLTSYIK NHGTGNWKTL PKRAGLLRCG KSCRLRWMNY 60 IRPDIKRGNI SPEEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNG HLSKKLKNQG 120 LLVKEAVTRR LTPPDRNSKK KKKNINNNEA KCINTENVKM NKIYAPKPTR IYPTYWNYVT 180 ESNEETEGTN GRLDSGDESS SGNFQEILSC SDNGEEANLL DVNHYLGSDL ELVNCDFFLE 240 DHEVLDRVYQ EYLQLLNVET DKEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-62	MYB family protein