PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020675648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 807aa MW: 87290.5 Da PI: 5.6667 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.7 | 7.3e-22 | 115 | 170 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+lgL++rqVk+WFqNrR+++k XP_020675648.1 115 KKRYHRHTPNQIQELEALFKECPHPDEKQRLELSKRLGLETRQVKFWFQNRRTQMK 170 688999***********************************************999 PP | |||||||
2 | START | 169.9 | 1.7e-53 | 324 | 550 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela++a++el+k+a+ +ep+W e +n++ + f++ + +ea r++++v+ ++ lve+l+d +W e+++ + t+ XP_020675648.1 324 ELALSAMDELLKMAEMGEPLWIPAQengkEALNYEHYEHLFPRCIGmkevgLVSEATRETAMVIINSLVLVETLMDAV-RWAEMFPgmiaRTITT 417 57899*****************999777777777777777777666********************************.*******999999999 PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwve 168 + is+g galqlm ae q+lsplvp R++ f+R+++ql +g w++vdvS+d ++ + + ++++++lpSg+++++++ng+ kvtwve XP_020675648.1 418 DIISTGvggsrnGALQLMHAEQQVLSPLVPiREVNFLRFCKQLADGAWAVVDVSIDDLRDTHSsaTGISAKCRRLPSGCVVQDMPNGYLKVTWVE 512 999999***************************************************9999886566678************************* PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h+++++ h+l+r+l++sg+a ga++wvatlqrqce+ XP_020675648.1 513 HAEYDETAAHQLYRPLLRSGMALGAQRWVATLQRQCEC 550 ************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 807 aa Download sequence |
MSFGGLFDGD SGGGRLVSDL PYGSSAMVSQ PRLVSNSGVP KPMFGSTGLS LGLQSNLEGQ 60 GDFSRLASVS GGGVGSVGEL DVLCRNKEDE NESRSGSDNL EGGSGDDMDE NPRKKKRYHR 120 HTPNQIQELE ALFKECPHPD EKQRLELSKR LGLETRQVKF WFQNRRTQMK TQMERHENTI 180 LRQENDKLRA ESITIRDAIR NPICGTCGGP AVLGEVSLEE QHLRIENARL KDELDRVCTL 240 AGKFIGRPIS SLVNSISTPV PNSSLELAVG GNGYGAFGSV PPTFSSVSDF VAGASSPLGT 300 VITPPARTSI PSVDRSMERS MFLELALSAM DELLKMAEMG EPLWIPAQEN GKEALNYEHY 360 EHLFPRCIGM KEVGLVSEAT RETAMVIINS LVLVETLMDA VRWAEMFPGM IARTITTDII 420 STGVGGSRNG ALQLMHAEQQ VLSPLVPIRE VNFLRFCKQL ADGAWAVVDV SIDDLRDTHS 480 SATGISAKCR RLPSGCVVQD MPNGYLKVTW VEHAEYDETA AHQLYRPLLR SGMALGAQRW 540 VATLQRQCEC LAILMSSSVP NRDHAGIMPA GRRSMLKLAQ RMTDNFCAGV CASSARKWSH 600 LANMGSIGED VRMMTRQSME DPGEPPGVVL SAATSVWLPV SPHRLFDFLR NETLRSQWDI 660 LSNGGPMQEM AHIAKGQDEG NAVSLLRASA VSANQSSMLI LQETCTDASG SMVVYAPVDV 720 PAMHLVMNGG DSAYVALLPS GFAVMPDGPV AAGGEGKIGG GSLLTVAFQI LVNSLPMAKL 780 TVESVETVNN LISCTVQKIK AALQCEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |