PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675634.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 550aa MW: 58737.9 Da PI: 6.7271

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675634.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.5	2.9e-10	153	177	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ XP_020675634.2 153 GEKDCVHYMLTRTCKFGEACKFDHP 177 7889********************9 PP
2	zf-CCCH	36	1.2e-11	205	230	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t tCkyG +CkF+H++ XP_020675634.2 205 GEPDCPYFLKTQTCKYGLKCKFNHPK 230 5799********************96 PP
3	zf-CCCH	39.6	8.4e-13	258	281	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C+f+a+tGtCk+G++CkF+H++ XP_020675634.2 258 TVCSFYAKTGTCKFGANCKFHHPK 281 68********************96 PP
4	zf-CCCH	37	5.6e-12	337	361	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ XP_020675634.2 337 GESDCPFYLKTGSCKYGATCRYSHP 361 7889********************9 PP
5	zf-CCCH	41.5	2.2e-13	417	442	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG+Ck+G+rCkF+H+ XP_020675634.2 417 PGEAECDYYMRTGHCKFGERCKFHHP 442 5789*********************9 PP
6	zf-CCCH	41.8	1.8e-13	474	497	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG+ C+F H+p XP_020675634.2 474 VACPFYMKTGTCKYGAACRFDHPP 497 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL 60 RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT 120 IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV 180 PEGGIPDWKE VPLISTTESF PERTGEPDCP YFLKTQTCKY GLKCKFNHPK VKSSTSVTVA 240 ESEAIPISSI LPERPSETVC SFYAKTGTCK FGANCKFHHP KDIQIQSAGK YTGYVEKKES 300 TANNAAAATV DIKHTKAFVP FSPATLSNSK GLPIRPGESD CPFYLKTGSC KYGATCRYSH 360 PDRIFINPTQ TANLSNAFIT PAIASLPIGV INPAASFVPS IDPRFAQLGV TVYPQKPGEA 420 ECDYYMRTGH CKFGERCKFH HPLDRSASTV ASAKPTQESV KLTLAGLPRR EGSVACPFYM 480 KTGTCKYGAA CRFDHPPPGE AIAMAQLSHG IAEADNSSSG DEVESDEEVE SANEVESGGE 540 EEGDDTETSQ

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL  60
RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT  120
IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV  180
PEGGIPDWKE VPLISTTESF PERTGEPDCP YFLKTQTCKY GLKCKFNHPK VKSSTSVTVA  240
ESEAIPISSI LPERPSETVC SFYAKTGTCK FGANCKFHHP KDIQIQSAGK YTGYVEKKES  300
TANNAAAATV DIKHTKAFVP FSPATLSNSK GLPIRPGESD CPFYLKTGSC KYGATCRYSH  360
PDRIFINPTQ TANLSNAFIT PAIASLPIGV INPAASFVPS IDPRFAQLGV TVYPQKPGEA  420
ECDYYMRTGH CKFGERCKFH HPLDRSASTV ASAKPTQESV KLTLAGLPRR EGSVACPFYM  480
KTGTCKYGAA CRFDHPPPGE AIAMAQLSHG IAEADNSSSG DEVESDEEVE SANEVESGGE  540
EEGDDTETSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-166	C3H family protein