PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020675633.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 552aa MW: 58953.2 Da PI: 6.7271 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 3e-10 | 153 | 177 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ XP_020675633.2 153 GEKDCVHYMLTRTCKFGEACKFDHP 177 7889********************9 PP | |||||||
2 | zf-CCCH | 36 | 1.2e-11 | 207 | 232 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t tCkyG +CkF+H++ XP_020675633.2 207 GEPDCPYFLKTQTCKYGLKCKFNHPK 232 5799********************96 PP | |||||||
3 | zf-CCCH | 39.6 | 8.5e-13 | 260 | 283 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C+f+a+tGtCk+G++CkF+H++ XP_020675633.2 260 TVCSFYAKTGTCKFGANCKFHHPK 283 68********************96 PP | |||||||
4 | zf-CCCH | 37 | 5.7e-12 | 339 | 363 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ XP_020675633.2 339 GESDCPFYLKTGSCKYGATCRYSHP 363 7889********************9 PP | |||||||
5 | zf-CCCH | 41.5 | 2.2e-13 | 419 | 444 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG+Ck+G+rCkF+H+ XP_020675633.2 419 PGEAECDYYMRTGHCKFGERCKFHHP 444 5789*********************9 PP | |||||||
6 | zf-CCCH | 41.8 | 1.8e-13 | 476 | 499 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG+ C+F H+p XP_020675633.2 476 VACPFYMKTGTCKYGAACRFDHPP 499 68********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence |
MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL 60 RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT 120 IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV 180 PEGGIPDWKE SQVPLISTTE SFPERTGEPD CPYFLKTQTC KYGLKCKFNH PKVKSSTSVT 240 VAESEAIPIS SILPERPSET VCSFYAKTGT CKFGANCKFH HPKDIQIQSA GKYTGYVEKK 300 ESTANNAAAA TVDIKHTKAF VPFSPATLSN SKGLPIRPGE SDCPFYLKTG SCKYGATCRY 360 SHPDRIFINP TQTANLSNAF ITPAIASLPI GVINPAASFV PSIDPRFAQL GVTVYPQKPG 420 EAECDYYMRT GHCKFGERCK FHHPLDRSAS TVASAKPTQE SVKLTLAGLP RREGSVACPF 480 YMKTGTCKYG AACRFDHPPP GEAIAMAQLS HGIAEADNSS SGDEVESDEE VESANEVESG 540 GEEEGDDTET SQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-164 | C3H family protein |