PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675587.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 651aa MW: 75619.8 Da PI: 7.7056

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675587.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.8	4.4e-24	52	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y++YA++vGFsvrk++++ ++++i ++++vCsk g+++ + + +k++ ++a+trtgC a+++ + ++dg+w+v+k++++HnHela XP_020675587.2 52 DMYCRYAHSVGFSVRKDHHSFWPNSRKIRMKDYVCSKAGFKKGLDLN-VKSKYRKANTRTGCPAMIRFSVDQDGEWKVNKCVENHNHELA 140 58***************************************9999.99999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MDNVLEEIND WSEMEGFTQE PELRARDGLQ QNTQPNFDIL SVVCNSEKEA FDMYCRYAHS 60 VGFSVRKDHH SFWPNSRKIR MKDYVCSKAG FKKGLDLNVK SKYRKANTRT GCPAMIRFSV 120 DQDGEWKVNK CVENHNHELA RPEDQHLLRS CRKITEERAF VLKSMTDAGI RTIDAFTYLA 180 DEVGGREHVG FLRRDAYNFV QRNRRCKIET GDTNSLIEIF KNRANSDNMF VWEVQYDEED 240 RLMNFFWADG VGRIDYDCFG DVIIFDTSYR LNKYNLACAP FVGVNNHWQN VLLGVAFLSE 300 ETVESFTWLF RTFLRVMGDK HPITIFTDQD QAMSRAIEIA FPQTRHRLCQ WHIMKKLPSK 360 VHCYNSNNKV RGLIYKCFSR CDSEEEFEST WTEMLNEGDL HSHVWLKELH RIRNKWSTTY 420 NKTYFNLGIL STQRSESTNN VCHGISKPTS TITECFLGLE KVMKTWRRNE KDEDFKCSQS 480 DVVPLVKSSP ILRQAARFYS RKLYSFFEEF LQGVGGMCIA QASTDLSTFF VKTVENIDQP 540 RYWTVNFDDA EGSIECSCGK FGMMGILCSH CLRVVRQIDI INIPPKYLLK RWSGRARKDL 600 YSDRPLSSMV ATGIPSDGIG SMIFRNTKLP SSNKQPEESN VHYHLLVVAE S

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MDNVLEEIND WSEMEGFTQE PELRARDGLQ QNTQPNFDIL SVVCNSEKEA FDMYCRYAHS  60
VGFSVRKDHH SFWPNSRKIR MKDYVCSKAG FKKGLDLNVK SKYRKANTRT GCPAMIRFSV  120
DQDGEWKVNK CVENHNHELA RPEDQHLLRS CRKITEERAF VLKSMTDAGI RTIDAFTYLA  180
DEVGGREHVG FLRRDAYNFV QRNRRCKIET GDTNSLIEIF KNRANSDNMF VWEVQYDEED  240
RLMNFFWADG VGRIDYDCFG DVIIFDTSYR LNKYNLACAP FVGVNNHWQN VLLGVAFLSE  300
ETVESFTWLF RTFLRVMGDK HPITIFTDQD QAMSRAIEIA FPQTRHRLCQ WHIMKKLPSK  360
VHCYNSNNKV RGLIYKCFSR CDSEEEFEST WTEMLNEGDL HSHVWLKELH RIRNKWSTTY  420
NKTYFNLGIL STQRSESTNN VCHGISKPTS TITECFLGLE KVMKTWRRNE KDEDFKCSQS  480
DVVPLVKSSP ILRQAARFYS RKLYSFFEEF LQGVGGMCIA QASTDLSTFF VKTVENIDQP  540
RYWTVNFDDA EGSIECSCGK FGMMGILCSH CLRVVRQIDI INIPPKYLLK RWSGRARKDL  600
YSDRPLSSMV ATGIPSDGIG SMIFRNTKLP SSNKQPEESN VHYHLLVVAE S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-101	FAR1 family protein