PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675303.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 366aa MW: 41203.9 Da PI: 7.509

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.8e-08	38	58	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C++G+rC++ H+ XP_020675303.1 38 ACTFYQK-GLCSFGSRCRYDHV 58 5****.***********7 PP
2	zf-CCCH	19.1	2.2e-06	148	170	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G+rC+ +Hg XP_020675303.1 148 QPICS-FAAAGSCSHGERCPHIHG 170 68899.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MADSLRKRVL CKYFVHGACF KGEYCEFSHD WKDQSNNACT FYQKGLCSFG SRCRYDHVKV 60 SCGQAHVPLP LSNARPCIGT GSIQAIHPSN VLLNGECQPS TSSLAEFSVS SKHIFPFSKP 120 AWAQFPDLSV NEDYPIGHDP AANSLADQPI CSFAAAGSCS HGERCPHIHG DQCSICKKHC 180 LHPYRPDERE EHMQLCQKNN QHLEALRFSQ DIECSVCLDR VLSKPTPAER KFGILSECDH 240 PFCISCIRNW RSNCPSIGMD VNSTLRACPM CRKLSYFVIP SVIWYSTSEE KQEIVNNYKA 300 KLKTIDCKYF DLGNGTCPFG SSCFYKHAYR DGRLEEVVLR HLDAEDGSIV IAKNIRLSDF 360 LNNLHL

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MADSLRKRVL CKYFVHGACF KGEYCEFSHD WKDQSNNACT FYQKGLCSFG SRCRYDHVKV  60
SCGQAHVPLP LSNARPCIGT GSIQAIHPSN VLLNGECQPS TSSLAEFSVS SKHIFPFSKP  120
AWAQFPDLSV NEDYPIGHDP AANSLADQPI CSFAAAGSCS HGERCPHIHG DQCSICKKHC  180
LHPYRPDERE EHMQLCQKNN QHLEALRFSQ DIECSVCLDR VLSKPTPAER KFGILSECDH  240
PFCISCIRNW RSNCPSIGMD VNSTLRACPM CRKLSYFVIP SVIWYSTSEE KQEIVNNYKA  300
KLKTIDCKYF DLGNGTCPFG SSCFYKHAYR DGRLEEVVLR HLDAEDGSIV IAKNIRLSDF  360
LNNLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-143	C3H family protein