PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675292.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 30956 Da PI: 5.1831

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675292.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.2	2.1e-16	152	206	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ + + LAk+l+L rq+ vWFqNrRa+ k XP_020675292.2 152 RKKLRLSKEQSAFLEESFKEQNTLNPKLKFVLAKQLNLRPRQIEVWFQNRRARSK 206 678899***********************************************98 PP
2	HD-ZIP_I/II	117.1	9.9e-38	152	241	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p+ K la++L+l+prq++vWFqnrRAR k+kq+E d+e+Lkr+++ l+een+rL+kev+eLr ++ XP_020675292.2 152 RKKLRLSKEQSAFLEESFKEQNTLNPKLKFVLAKQLNLRPRQIEVWFQNRRARSKLKQMEIDCEFLKRRCEMLREENSRLHKEVTELR-AI 241 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MELTLSLGES TEKALEEVAG DGGDRQSGFC MGLGFAQERR VEVGEESRGG YEGWLKVEEG 60 GWSVDPPVQL NLLPLAPIPR LDSTQLALPW STEDMNLETP PVEEEDERAA ISSSPIRMVS 120 SLHMNFASGG GGVAVERASS RGSDEEENDK GRKKLRLSKE QSAFLEESFK EQNTLNPKLK 180 FVLAKQLNLR PRQIEVWFQN RRARSKLKQM EIDCEFLKRR CEMLREENSR LHKEVTELRA 240 IKSFHIQVPP TTLSICPSCE RVSPPASPPQ SPPTPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	209	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-59	HD-ZIP family protein