PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675056.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 354aa MW: 38463.7 Da PI: 8.1883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.2	3.7e-07	158	179	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_020675056.1 158 FCEICGKGFRRDANLRMHMRAH 179 6*******************99 PP
2	zf-C2H2	13.4	0.00023	247	270	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C C+ ksFs +Lk+H +++ XP_020675056.1 247 YTCDVCNkKSFSVVADLKNHKKSC 270 9********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MIGSTGSRNV GGSAASENEP PNFQSSSVTI TTPMASDPRI PLLNLSLLGQ KMDCLRRSLS 60 DSVDRHVSIS GDQLQLFSGE IASAVHQVII NGSALLLAST QLLDATKPLH PLSNIDAKPS 120 VNSGQVPPRP LPEAVVADAD AEIVEIDASE LMAEHVHFCE ICGKGFRRDA NLRMHMRAHG 180 DRFKTLESLT KPYGRIATEG IDTGRHVRFS CPFLSCRRNR NHARFRPLKT TVCVRNHFRR 240 SHCPKMYTCD VCNKKSFSVV ADLKNHKKSC GESQWRCSCG TSFSRKDKLF GHVALFDGHF 300 PVVGTGEEER GDGAVKAGEI KDKRGGQAGG SLDEGFFDGL MEEIGGMGGG WMGL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MIGSTGSRNV GGSAASENEP PNFQSSSVTI TTPMASDPRI PLLNLSLLGQ KMDCLRRSLS  60
DSVDRHVSIS GDQLQLFSGE IASAVHQVII NGSALLLAST QLLDATKPLH PLSNIDAKPS  120
VNSGQVPPRP LPEAVVADAD AEIVEIDASE LMAEHVHFCE ICGKGFRRDA NLRMHMRAHG  180
DRFKTLESLT KPYGRIATEG IDTGRHVRFS CPFLSCRRNR NHARFRPLKT TVCVRNHFRR  240
SHCPKMYTCD VCNKKSFSVV ADLKNHKKSC GESQWRCSCG TSFSRKDKLF GHVALFDGHF  300
PVVGTGEEER GDGAVKAGEI KDKRGGQAGG SLDEGFFDGL MEEIGGMGGG WMGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-69	C2H2 family protein