PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674980.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 289aa    MW: 32369.1 Da    PI: 7.3218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-102370247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT++E +l+ +a + +  +   +W ++a +++ g+t +++ s++q++
   XP_020674980.1 23 GNWTQQENKLFENALAHFDRDtpdRWMRVAGMIP-GKTVEDVMSHYQDL 70
                     89*****************99*************.************86 PP
2Myb_DNA-binding47.93e-15130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_020674980.1 130 PWTEEEHKRFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 174
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MEVLSPAYFS NYSNWLIGEK KNGNWTQQEN KLFENALAHF DRDTPDRWMR VAGMIPGKTV  60
EDVMSHYQDL EEDVSCIEAG LVPFPGYSSS SFTLDWESGN DFDDMKQAYS IGVKRSGSRL  120
TDHERKKGVP WTEEEHKRFL LGLKKYGKGD WRNISRNFVV TRTPTQVASH AQKYFIRLNS  180
GSKDKRRASI HDITMVNVED SRPPSPSQPS VVTMQSCSAT APGNTEKFSV VVDSKQPNEV  240
ANAFSASPDD AHLVQSSYGI QPYGMKLQAR NSNNGNLNGS IVGHHGVLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-96MYB family protein