PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674655.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 277aa MW: 31796.7 Da PI: 6.8023

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	85	138	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +L++ lgL+ rq+ +WFqNrRa++k XP_020674655.1 85 KKRRLNMEQVRTLEKSFELGNKIEPERKIQLSRALGLQPRQIAIWFQNRRARWK 138 456899***********************************************9 PP
2	HD-ZIP_I/II	126.7	9.8e-41	84	174	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv++LE+sFe +k+eperK +l+r+Lglqprq+a+WFqnrRAR+ktkqlEkd++ Lkr++da+k++n++L++++++L++e+ XP_020674655.1 84 EKKRRLNMEQVRTLEKSFELGNKIEPERKIQLSRALGLQPRQIAIWFQNRRARWKTKQLEKDFNLLKRKFDAIKSDNDSLQSQNKKLQAEI 174 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MSLDENMASS SNGIPTSPFF HPNFILQLHD EQNPTMNSLN PLFPSNPHDF SRGMVAMMGR 60 RSVTFSGNAE GEDDLSDESS LPGEKKRRLN MEQVRTLEKS FELGNKIEPE RKIQLSRALG 120 LQPRQIAIWF QNRRARWKTK QLEKDFNLLK RKFDAIKSDN DSLQSQNKKL QAEILALKGR 180 ERSELINLNK DIEGSCSNRS EHSSDINLDI SRPLTDQLNH IQSISFFPAI RPLPTMSQFL 240 HGSSTRPELP EENLGNLLCG MEDQNTFWSW HDHPNFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	2e-79	HD-ZIP family protein