PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674644.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 378aa    MW: 40998.3 Da    PI: 6.8077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674644.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-20180229255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  XP_020674644.2 180 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 229
                     7********.**********7.....337*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MKVAQPSESE DIERFFSEGE EEVEAGPTAK TPEVIPPSSP PQSPPSSTDM LSIIDRQKEM  60
SAMVSALSHV VSSGHHTDAG NQAAGTSGRL VTVRSLPSSL YSPATPSSSI ISFGDRGIKR  120
EREEESSELK IYHRALLEFG SSSGASSSST AAQTQSSSKE AQSLAPATST ALQEGEVRRR  180
YRGVRQRPWG KWAAEIRDPH KAARVWLGTF ETAEAAARAY DEAALRFRGN RAKLNFPETA  240
RFPQPINQPP SIPLPESSSS VSHFMHRPLL RFRSLDATRD YMEYTRVLQG AGEYQGMPPT  300
APLGQFMYST SSIASSSHSL TRGSDSASSS SSSMPLLYLP PSETGQSLFR PPGTTHEQNF  360
PAAPPWTDSS RYPPSCSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-19ERF family protein