PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020674626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 253aa MW: 28030.3 Da PI: 9.2523 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.8e-07 | 12 | 31 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++ G Ck+G+ Ck++H++ XP_020674626.1 12 HFLKKGMCKFGAACKYHHPR 31 89****************96 PP | |||||||
2 | zf-CCCH | 38.5 | 1.9e-12 | 53 | 76 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G CkF+H++ XP_020674626.1 53 KSCSYYMRTGTCKFGVVCKFNHPQ 76 56********************97 PP | |||||||
3 | zf-CCCH | 40.1 | 6.1e-13 | 194 | 220 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++CkF+H++ XP_020674626.1 194 PDRPECHYYLKTGNCKYGSTCKFHHPK 220 579**********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MLFDMLLALL QHFLKKGMCK FGAACKYHHP RDRPDAQPVL VNVLGFPIRQ DQKSCSYYMR 60 TGTCKFGVVC KFNHPQPATI WTVLPLNGSP TSGSTIPSMT STARLPFVDG VSSWSLSNRP 120 TYTSSHHLQN LAAYIPVILP PSLGIMPVQQ GWPAYMGFVN HQLSPDVLGP TPIPKSNNIT 180 QSSLSNTPNF PERPDRPECH YYLKTGNCKY GSTCKFHHPK ERSSVSTSTL GPHGLPLRPD 240 QPVCIYYNLN GAC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 3e-51 | C3H family protein |