PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020674624.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 341aa MW: 38101.3 Da PI: 9.5618 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.6e-07 | 8 | 27 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++ G Ck+G+ Ck++H++ XP_020674624.2 8 HFLKKGMCKFGAACKYHHPR 27 89****************96 PP | |||||||
2 | zf-CCCH | 36.7 | 6.8e-12 | 48 | 70 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtGtCk+G CkF+H++ XP_020674624.2 48 SCSYYMRTGTCKFGVVCKFNHPQ 70 5********************97 PP | |||||||
3 | zf-CCCH | 39.5 | 9.1e-13 | 188 | 214 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++CkF+H++ XP_020674624.2 188 PDRPECHYYLKTGNCKYGSTCKFHHPK 214 579**********************96 PP | |||||||
4 | zf-CCCH | 34.9 | 2.6e-11 | 234 | 258 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++ +G C+yG++CkF+H+ XP_020674624.2 234 DQPVCIYYNLNGACWYGSNCKFNHP 258 6899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence |
MLLALLQHFL KKGMCKFGAA CKYHHPRDRP DAQPVLVNVL GFPIRQKSCS YYMRTGTCKF 60 GVVCKFNHPQ PATIWTVLPL NGSPTSGSTI PSMTSTARLP FVDGVSSWSL SNRPTYTSSH 120 HLQNLAAYIP VILPPSLGIM PVQQGWPAYM GFVNHQLSPD VLGPTPIPKS NNITQSSLSN 180 TPNFPERPDR PECHYYLKTG NCKYGSTCKF HHPKERSSVS TSTLGPHGLP LRPDQPVCIY 240 YNLNGACWYG SNCKFNHPLF GCYDYNMRAT CRPDDFRNQR NTRVAWTPWE AKPTKTMKSE 300 ADNRPFSSNN SKEDKNIAAR TSSPLHVSPS SESTQTNSNF I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 2e-55 | C3H family protein |