PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020674623.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 347aa MW: 38851.2 Da PI: 9.3539 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.7e-07 | 12 | 31 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++ G Ck+G+ Ck++H++ XP_020674623.2 12 HFLKKGMCKFGAACKYHHPR 31 89****************96 PP | |||||||
2 | zf-CCCH | 37.9 | 2.9e-12 | 53 | 76 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G CkF+H++ XP_020674623.2 53 KSCSYYMRTGTCKFGVVCKFNHPQ 76 56********************97 PP | |||||||
3 | zf-CCCH | 39.5 | 9.3e-13 | 194 | 220 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++CkF+H++ XP_020674623.2 194 PDRPECHYYLKTGNCKYGSTCKFHHPK 220 579**********************96 PP | |||||||
4 | zf-CCCH | 34.9 | 2.6e-11 | 240 | 264 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++ +G C+yG++CkF+H+ XP_020674623.2 240 DQPVCIYYNLNGACWYGSNCKFNHP 264 6899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence |
MLFDMLLALL QHFLKKGMCK FGAACKYHHP RDRPDAQPVL VNVLGFPIRQ DQKSCSYYMR 60 TGTCKFGVVC KFNHPQPATI WTVLPLNGSP TSGSTIPSMT STARLPFVDG VSSWSLSNRP 120 TYTSSHHLQN LAAYIPVILP PSLGIMPVQQ GWPAYMGFVN HQLSPDVLGP TPIPKSNNIT 180 QSSLSNTPNF PERPDRPECH YYLKTGNCKY GSTCKFHHPK ERSSVSTSTL GPHGLPLRPD 240 QPVCIYYNLN GACWYGSNCK FNHPLFGCYD YNMRATCRPD DFRNQRNTRV AWTPWEAKPT 300 KTMKSEADNR PFSSNNSKED KNIAARTSSP LHVSPSSEST QTNSNFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 2e-57 | C3H family protein |