PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674221.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 328aa MW: 35773.8 Da PI: 7.5687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	151	197	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k Lq XP_020674221.1 151 DHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKTLQ 197 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MDSQAAATRW LSETTGMLDP CYHQWELSSL DHLLWDDLHQ TLSSESYSLK PPATSITSNA 60 HSCGSSIDSC SPMSAVERPK KVPKTSSMSI LSFGNPDVGI NKPTLYNNLV IGTVNTENSL 120 KRNYEAMPVI SQGGKKVAGV MVPRPSSHNQ DHILAERKRR EKLSQRFIAL SAIVPGLKKM 180 DKASVLGDAI KYLKTLQDKV KTLEEQTAKR TVETAVLVKK SHIAAEEENE ASSSDENFGG 240 DQSQLPEIEV KLSDKTLLIK IHCQNRKGAL VCALSEIEKL QLTVLSTSSV PFAASSLDIT 300 VTAQIEEGFS MTVKDLVRKL GSASGQFT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	161	ERKRRE
2	157	162	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-56	bHLH family protein