PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673976.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 352aa MW: 41366.4 Da PI: 9.5861

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.9	8.7e-14	40	117	16	99
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +p+kfa ++ + + +tl+ ++g W++ l k ++++l++GWkeF ang+ke ++ Fk+ g+s+f +vk+f++ XP_020673976.1 40 MEFPNKFAWKFRVD--LPDLITLKVSNGDLWKICL--FKEENHFYLKDGWKEFIVANGIKEHYSLFFKYAGNSTF--TVKIFDQ 117 66899*999655..6668***********..9999**************************9999..**997 PP
2	B3	45.6	1.3e-14	259	350	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f kvl++s+ ++ + +p +f+++h + ++k+++l ++ ++W v ++ ++s + + +k W +Fv++n+LkegD++ kl+++s++ + v+ XP_020673976.1 259 FAKVLMKSHLCGQSFMAIPARFVSDHFHA--KPKKIILCKQKQKQWIVSCKCINNSFG-FGGKSWLHFVQDNELKEGDVLFCKLVNSSKGVMDVR 350 89**********************866..6779***********87777755.5789*******************99888866665 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MEIRGCWNCK KFEEHYYWNH LEETSLCFMK LMEGDFSLVM EFPNKFAWKF RVDLPDLITL 60 KVSNGDLWKI CLFKEENHFY LKDGWKEFIV ANGIKEHYSL FFKYAGNSTF TVKIFDQTGC 120 FRDTTNFTRY NKNKAYKVYQ RRHRMDVAAP NLKRSRSSTF KIYHSSSLAY YDYKPEQEIP 180 NNNSSDGSFS DEVSYCKRKH RERSDQDVKP SQICQGFDKK HISLYGRLKS KTKEGRENSE 240 DAVKKLKPFY VNETADSSFA KVLMKSHLCG QSFMAIPARF VSDHFHAKPK KIILCKQKQK 300 QWIVSCKCIN NSFGFGGKSW LHFVQDNELK EGDVLFCKLV NSSKGVMDVR IV

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MEIRGCWNCK KFEEHYYWNH LEETSLCFMK LMEGDFSLVM EFPNKFAWKF RVDLPDLITL  60
KVSNGDLWKI CLFKEENHFY LKDGWKEFIV ANGIKEHYSL FFKYAGNSTF TVKIFDQTGC  120
FRDTTNFTRY NKNKAYKVYQ RRHRMDVAAP NLKRSRSSTF KIYHSSSLAY YDYKPEQEIP  180
NNNSSDGSFS DEVSYCKRKH RERSDQDVKP SQICQGFDKK HISLYGRLKS KTKEGRENSE  240
DAVKKLKPFY VNETADSSFA KVLMKSHLCG QSFMAIPARF VSDHFHAKPK KIILCKQKQK  300
QWIVSCKCIN NSFGFGGKSW LHFVQDNELK EGDVLFCKLV NSSKGVMDVR IV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-19	B3 family protein