PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020673865.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 406aa    MW: 45592.5 Da    PI: 6.5159
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020673865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-15129173147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+rW+ eE+e+++da  ++G + Wk+I   +g ++t  q++s+ qky
   XP_020673865.1 129 RDRWSDEEHERFLDALLLFGRE-WKKIEDFVG-TKTVIQIRSHAQKY 173
                      89******************99.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MASSAPIRLR RCSLPVRLKG TTSLPFRSEG ATSVSQLWEL AHYEGEQSVR WIATCYSKRE  60
DLDAANRELD MEELQIEEFN WIALSLAGTR RGSAELLPPN SSGHASFTVL IQDGTIKKLR  120
KPYTITKSRD RWSDEEHERF LDALLLFGRE WKKIEDFVGT KTVIQIRSHA QKYFLKVQKN  180
GIMAHVPPAR PKRNSTHPYP KKPDDDPTTL QLQSSMIFPS ASTGLIVSSS SWDDPSFLRD  240
YTSNDAMSSS NYYNALCGVE CDNGTLGLTN IYNHNVSWTG SSSTSQVTSE APEQGSRQSF  300
HAAIPEFSKV YNFIGTLIDP DINSTMGMYL QKLKEMDPIT AKTVLILVKN LIINLSTPEF  360
DPLINWLSTY DPETKTIGSA METSALTNVM YPPYQVPHDA HYLPPP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.17e-72MYB_related family protein