PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020673774.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 517aa    MW: 56284.6 Da    PI: 6.6834
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020673774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.48.4e-471495002374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL   A a+++ +l +aq+l++ l+elasp+gd+++Rla+y ++ L++  ++   +l++ l+  +t+        +al  f+evs ++ f + 
  XP_020673774.1 149 EQLLNPLAAAIDAANLYRAQHLICVLQELASPTGDANHRLAFYGLQVLSRNFTS---SLSSPLNYASTD---PRLFRSALIKFHEVSAWFAFPNC 237
                     689999***********************************************9...777777777666...3444455556************* PP

            GRAS  97 taNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                     +aN aIl+a+ g         +H++D ++s+GlQWp+L++aL+ R     g+ ++++T+v+  + g   s+ +      +L ++ ++++++++ +
  XP_020673774.1 238 LANAAILQAMGGRagpvrsGSLHVVDVGVSHGLQWPTLMEALTRRGmglVGQGMVKLTVVETGSGGpfgSAPAGYDFVPQLMRYGRSIDLNLRVE 332
                     ************9888877889***********************98778899*********777799999999****************99877 PP

            GRAS 180 vlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                                  e    p +E+++V+l+++  r+           + + k+v++++P+++v++e e  +++++  ++f++  e+ + +++s+++
  XP_020673774.1 333 R-----------GEVGRGPgKETVVVCLQFRAGRVG----------PGFWKAVREMEPDLLVLTEMEEGRGRGE-GKGFARRAEMLWGFLESTSV 405
                     6...........344555569*********999997..........56*******************9997776.6899999***********88 PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrp 366
                      +    + r + Er++++ e+  ++  eg+e   +    e+W+e++e  GFk+  ++e+a++  ++ll+k++ +  ++++   +g++ l Wk+++
  XP_020673774.1 406 AF----KGRDSEERRVVEGEAARLLEEEGEE--GEGWGNERWKEKMEGEGFKEEGFGEEAVEAGRALLKKYDgN--WEMKiATDGAVGLSWKGQS 492
                     86....66666666667777999*******9..777789*********************************44..455523456667******* PP

            GRAS 367 LvsvSaWr 374
                     + ++S W+
  XP_020673774.1 493 VSFCSLWK 500
                     *******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MTLEEGLDAS NLSSHHGNHH HHHLMDWLED SISFLPTFPN ELYSVPEEIA HCQWWVQDQN  60
QPLTAAAAVA AVAEAPSIAI VTAKPEPLPE MPKAELPKKR KLAARQTAGV FEEDRKPQVN  120
NGSKKGHGRG SMSNSGSGGG ASKEVRWAEQ LLNPLAAAID AANLYRAQHL ICVLQELASP  180
TGDANHRLAF YGLQVLSRNF TSSLSSPLNY ASTDPRLFRS ALIKFHEVSA WFAFPNCLAN  240
AAILQAMGGR AGPVRSGSLH VVDVGVSHGL QWPTLMEALT RRGMGLVGQG MVKLTVVETG  300
SGGPFGSAPA GYDFVPQLMR YGRSIDLNLR VERGEVGRGP GKETVVVCLQ FRAGRVGPGF  360
WKAVREMEPD LLVLTEMEEG RGRGEGKGFA RRAEMLWGFL ESTSVAFKGR DSEERRVVEG  420
EAARLLEEEG EEGEGWGNER WKEKMEGEGF KEEGFGEEAV EAGRALLKKY DGNWEMKIAT  480
DGAVGLSWKG QSVSFCSLWK PAYKTTAGVL SSGGRRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192101PKAELPKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-58GRAS family protein