PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673512.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 310aa MW: 32424.6 Da PI: 9.8487

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	9.2e-10	108	133	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ XP_020673512.1 108 KTRLCNKYNTAEGCKFGDKCHFAHGE 133 9***********************96 PP
2	zf-CCCH	33.6	6.8e-11	277	301	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C++f + GtC +G+rC+FaHg XP_020673512.1 277 FKTKMCDNFNK-GTCTFGERCHFAHG 301 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MYSHDATRKR GRPDAANGNG NVPSLKRSKE MESNQSGLGS KSKPCTKFFS TSGCPFGEGC 60 HFLHYVPGGY NAVAQINNRG STALPPPSRN HLIGPTSLSD GPATPVTKTR LCNKYNTAEG 120 CKFGDKCHFA HGERELGRPL HSGHEQHPMA NAIGGRLGGR FEPPPPPGLG PAASFGASAT 180 AKISVDASLA GAIIGKGGVN TKQICRLTGA KLFIREHETD ANLRNIELEG TFDQIKQATA 240 MVRELIVNIS SSAAPMPLKP AGGFGAGGGN GGPGSNFKTK MCDNFNKGTC TFGERCHFAH 300 GAAELRKAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	3e-45	C3H family protein