PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020673262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LSD | ||||||||
Protein Properties | Length: 174aa MW: 18322.3 Da PI: 8.3331 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 27.7 | 4.4e-09 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+Y sVRCa+C+t+ XP_020673262.1 7 CSGCRSLLRYESVTNSVRCAICNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 42.7 | 9.2e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+ +L+Y rGA+sVRC++C+t+ XP_020673262.1 46 CGGCHRMLMYARGATSVRCSCCNTI 70 ***********************97 PP | |||||||
3 | zf-LSD1 | 34.4 | 3.7e-11 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C+t+L YP GAp V+CalC++V XP_020673262.1 84 CAQCHTMLVYPHGAPCVKCALCNFV 108 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence |
MPGELVCSGC RSLLRYESVT NSVRCAICNT ITPVLLQSQD AAQLVCGGCH RMLMYARGAT 60 SVRCSCCNTI NHARSANQLA HVNCAQCHTM LVYPHGAPCV KCALCNFVTS VATNSGMVPI 120 LVNMPNGATP THPSTSAPLP NSNNQTVVVE NPMSMDQSGK LVTNVVVGVT TGKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-43 | LSD family protein |