PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673198.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 230aa MW: 26213 Da PI: 8.1268

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673198.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.6e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+ ++k+ G ++W++ +++ g+ R++k+c++rw +yl XP_020673198.2 16 KGSWTLEEDRRLIAYIKKNGHRNWRALPKEAGLLRCGKSCRLRWINYL 63 799***************************99**********97 PP
2	Myb_DNA-binding	55.6	1.2e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l XP_020673198.2 69 RGNFTKEEEDTIIKLHEMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MGRGRAPCCQ KVGLNKGSWT LEEDRRLIAY IKKNGHRNWR ALPKEAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFTKEEEDTI IKLHEMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRLKP 120 SKLTPLLSNT TIKLHEGSLS PAYSSTTTIS LSRETSSSSA DGEVFFLDNM KIPIDPHLDI 180 WDVLDDVSMS MPPSLMSMTN DTNNIVEIPI NECERWLTDL EEELGLYDNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	3e-68	MYB family protein