PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672908.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 429aa MW: 47644.2 Da PI: 7.1252

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	1e-11	52	77	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++++tG C yG++C+++H+ XP_020672908.1 52 PGEPDCMHYMKTGSCGYGSSCRYNHP 77 5789*********************9 PP
2	zf-CCCH	34.7	3e-11	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtG Ck+G++Ck++H++ XP_020672908.1 96 QPDCQYFLRTGMCKFGATCKYHHPR 120 789********************96 PP
3	zf-CCCH	39.5	9.1e-13	142	165	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G CkF H++ XP_020672908.1 142 KSCSYYMRTGTCKFGVACKFDHPQ 165 66********************97 PP
4	zf-CCCH	38.4	2.1e-12	285	310	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG++Ck++H++ XP_020672908.1 285 DQPECQYYLKTGSCKYGSTCKYHHPR 310 689*********************96 PP
5	zf-CCCH	33.2	9.1e-11	330	354	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++ +GtC+yG+ C+F H+ XP_020672908.1 330 GHAVCSFYSMYGTCSYGSACRFDHP 354 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MPDTREFQNN ALPTYSNASP VNHNIDESMR RLKVEDNYDE VDAYANPYPD RPGEPDCMHY 60 MKTGSCGYGS SCRYNHPTYV GQGTRAKGEL PERVGQPDCQ YFLRTGMCKF GATCKYHHPR 120 DRQDARALGF NILGFPMRQD EKSCSYYMRT GTCKFGVACK FDHPQPASGA IFPLALNGSS 180 AYGSPLSSVA PAPSMPFAGG IAAWPLSNGP AYMSNPRMQC LPAYMPVIIP PTSGTIPGQQ 240 GWTNYTGNVS QVPSPDIVGH TQTPKHKNNT HPSPSFVENF PERPDQPECQ YYLKTGSCKY 300 GSTCKYHHPR ERFSSATNTL GPFGLPMRPG HAVCSFYSMY GTCSYGSACR FDHPWISYYN 360 YSLPEMSIPD HFPLFPNQRN PQATLTSLEA PKIMKSEARD EAPPPDNDEY RDPQSNSAIS 420 SESLLNQSD

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MPDTREFQNN ALPTYSNASP VNHNIDESMR RLKVEDNYDE VDAYANPYPD RPGEPDCMHY  60
MKTGSCGYGS SCRYNHPTYV GQGTRAKGEL PERVGQPDCQ YFLRTGMCKF GATCKYHHPR  120
DRQDARALGF NILGFPMRQD EKSCSYYMRT GTCKFGVACK FDHPQPASGA IFPLALNGSS  180
AYGSPLSSVA PAPSMPFAGG IAAWPLSNGP AYMSNPRMQC LPAYMPVIIP PTSGTIPGQQ  240
GWTNYTGNVS QVPSPDIVGH TQTPKHKNNT HPSPSFVENF PERPDQPECQ YYLKTGSCKY  300
GSTCKYHHPR ERFSSATNTL GPFGLPMRPG HAVCSFYSMY GTCSYGSACR FDHPWISYYN  360
YSLPEMSIPD HFPLFPNQRN PQATLTSLEA PKIMKSEARD EAPPPDNDEY RDPQSNSAIS  420
SESLLNQSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	2e-95	C3H family protein