PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020672894.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 425aa    MW: 47832.7 Da    PI: 6.5766
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020672894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.44.6e-137484221374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++g+  +a+a+L+++s l+spdgd+mqR+a+yfteALa+rl+rs+++ly+al+p   + ++s+++++a +lf++++P+l++s+
  XP_020672894.1  48 LIHLLLNCATHVAAGNIDQANAFLEQISFLSSPDGDTMQRIASYFTEALARRLLRSWPGLYRALNPDLPE-SSSASTFHACRLFHDLFPFLRLSF 141
                     689**************************************************************99997.6788899***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l+ NqaIlea+ege+ vH++D++ s + QW+aLlq+La+R+egpp+lRiT+vg+    s++ l ++++ L++ Ae+l++pf+f++ v +rl++l+
  XP_020672894.1 142 LVSNQAILEAMEGEKVVHVVDLGGSDPSQWIALLQSLAARQEGPPHLRITAVGE----SRDFLTHMASILSNEAEKLDIPFQFHA-VISRLDTLN 231
                     ******************************************************....9**************************.79******* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.........desvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                     +e+Lrvk+gEala+ + lqlh ll         +      +    +++++L  +++lsPk++vv+eqe++hn++++ erf+eal++y+a+fd+le
  XP_020672894.1 232 VESLRVKTGEALAITSLLQLHPLLapnddaaapR------KhfstKIESFLTSLWGLSPKIMVVTEQESNHNGSTLKERFMEALYFYAAMFDCLE 320
                     ***********************97766554321......123346789********************************************** PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                     +++pr+s er+ vE++l+g+ei+n++aceg er+erhe+le+W +rle+aGF  v ls++  +qa++ll  ++sdgy+v+e++gs++++W++r+L
  XP_020672894.1 321 STVPRQSAERARVEKMLFGEEIKNIIACEGLERKERHEKLERWMQRLEMAGFWRVGLSYHGLMQARRLLLGFGSDGYQVKEQNGSFFFCWQERAL 415
                     *********************************************************************************************** PP

            GRAS 368 vsvSaWr 374
                     +svSaWr
  XP_020672894.1 416 FSVSAWR 422
                     ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MAGIADELSS SVTSSPLASF MSISPTSLGS PYAPWLRDLK SDERGLFLIH LLLNCATHVA  60
AGNIDQANAF LEQISFLSSP DGDTMQRIAS YFTEALARRL LRSWPGLYRA LNPDLPESSS  120
ASTFHACRLF HDLFPFLRLS FLVSNQAILE AMEGEKVVHV VDLGGSDPSQ WIALLQSLAA  180
RQEGPPHLRI TAVGESRDFL THMASILSNE AEKLDIPFQF HAVISRLDTL NVESLRVKTG  240
EALAITSLLQ LHPLLAPNDD AAAPRKHFST KIESFLTSLW GLSPKIMVVT EQESNHNGST  300
LKERFMEALY FYAAMFDCLE STVPRQSAER ARVEKMLFGE EIKNIIACEG LERKERHEKL  360
ERWMQRLEMA GFWRVGLSYH GLMQARRLLL GFGSDGYQVK EQNGSFFFCW QERALFSVSA  420
WRFRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-97GRAS family protein