PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020672519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | ARF | ||||||||
Protein Properties | Length: 672aa MW: 74832.2 Da PI: 6.211 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.4 | 2.1e-21 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++aee+ ++++ ++l+ +d++ ++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_020672519.1 127 FCKTLTASDTSTHGGFSVLRRHAEEClppldmsQHPP--WQELVAKDLHDNEWHFRHIFRGQPRRHLLTTGWSIFVSSKRLVAGDAFIFL--RGD 217 99*****************************654444..458************************************************..347 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el v+v+r XP_020672519.1 218 NGELGVGVRR 227 8889999987 PP | |||||||
2 | Auxin_resp | 108.7 | 6.4e-36 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+ F+v+Y+Pras seF+++v+k+++a ++ +svGmRfkm+fe+++++err+sGt++gv d ++rW++S+WrsLk XP_020672519.1 253 ASHAVSTGALFSVFYKPRASCSEFIISVNKYLEARSQILSVGMRFKMRFEGDEAPERRFSGTIIGVADKASSRWSDSEWRSLK 335 789******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence |
MALPSNPSGR GVPGSAFCGN LLYKELWHAC AGPLVTVPRQ GERVYYFPQG HMEQLEASTQ 60 QGLDHQMPLF DLPSKILCRV VNVELRAESD TDEVYAQITL QPETDQSEVT SPDPLLPEPE 120 RSTFHSFCKT LTASDTSTHG GFSVLRRHAE ECLPPLDMSQ HPPWQELVAK DLHDNEWHFR 180 HIFRGQPRRH LLTTGWSIFV SSKRLVAGDA FIFLRGDNGE LGVGVRRLMR QPNNMPSSVI 240 SSHSMHLGVL ATASHAVSTG ALFSVFYKPR ASCSEFIISV NKYLEARSQI LSVGMRFKMR 300 FEGDEAPERR FSGTIIGVAD KASSRWSDSE WRSLKVQWDE PSSIPRPDWV SPWELEPLVV 360 STSPTSQQPV RNKRARPPVS TSAAPELPSL YGLWKSQPEA NQTFLYSGSH RGHEPYASSS 420 SFPLFPQTPK PGRGLLAANN SNLLSIRPDP QSAPSERKLE ASGGCMLFGI QLVEASPTIE 480 ETSPLTIASG VRDDHLTMIL DTDSDRQSQP SNINYSDAPV VSSDQKSCLR SHSETQSRQT 540 RSCTKVQMQG IAVGRAVDLT KLEGYEDLLQ KLEIMFNIHG ELIGDSNKWK VAYTDDEDDI 600 MMVGDDPWHE FCCIVRKIYI FARDKAKGLS PKIRLPAIDE VSKPVVLRQK QGSESESAQN 660 ASVCSEDHHD ED |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | ARF family protein |