PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020672446.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 1149aa MW: 127781 Da PI: 5.6624 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.7 | 3.1e-19 | 196 | 242 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l XP_020672446.2 196 KGQWTPEEDEILCNAVHHYHGKNWKKIAECFP-DRTDVQCLHRWQKVL 242 799*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.3e-18 | 248 | 294 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v+++G++ W+tI++ ++ gR +kqc++rw+++l XP_020672446.2 248 KGPWSKEEDEIIIEMVNKFGPKKWSTISQALP-GRIGKQCRERWHNHL 294 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.4 | 4.4e-15 | 300 | 342 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++ +G++ W+ + ++ gR+++++k++w+ XP_020672446.2 300 KDAWTQEEEIALIHAHQIYGNK-WAELTKFLP-GRSDNSIKNHWN 342 679*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1149 aa Download sequence |
MVLYFKARPE VGDYTIYMGL DKHENEELIK YGFPEDIWFH VDKMSSAHVY LRLNKNQTID 60 DICEGLLEDC AQLVKANSIQ GNKVNNVDVV YTPWYNLKKT PSMDVGQVGF HNSKMVRTVR 120 VEKRVNEIVN RLNKTKVERN PDLKDGRVGS SSATTPDGMG EASSSTSLID GSDCDFLRQQ 180 QALHGRITGP KRRSTKGQWT PEEDEILCNA VHHYHGKNWK KIAECFPDRT DVQCLHRWQK 240 VLNPALVKGP WSKEEDEIII EMVNKFGPKK WSTISQALPG RIGKQCRERW HNHLNPAINK 300 DAWTQEEEIA LIHAHQIYGN KWAELTKFLP GRSDNSIKNH WNSSVKKKLE SYMVQGLIER 360 YPGLPNVVSS TTARIRQKNH DSGFKEKSDI EDSSECSSSA LVASSQSECE MAKPITEDGD 420 HKQEEAIKKE VDSHLPVRSS EYYGSAEEAT FGASKFHCAE VLSEVASPGN FLPKAEGSGN 480 EIRKPSNDDN YEKKDTMPHK PTSLETSTSD AGLGFENNDK PWISLNNGCS PNLFQMHPVT 540 ALGMENLDCA AAMSCKSFIH SPGASMNFAP YSYPVFPVNT SNMYGLPFCQ SLMNVPPSFI 600 CPSANVDIQD LSWRLQNSGS IAGSFIGVPI SDCPMPPVPE VMPSSHETID QGNERQVQLE 660 EKQRLEEETQ TYTSSCDNLT RNLSLASEEK VEFEKDLEPG TVSPPDEMKD NQSENFFNSG 720 SLFYEPPRIQ SLEFPFVCCD IVSSDLQQAY SPLGIRQLMM SSASCNLWDS PSRDDSPDGI 780 LKHAAKSFIC TPSIMKKRQR ELLSPLQERR FDKKSGTDMN RGSFFTSLTK GDEACMEYMI 840 GEVDAENICS SLADDVRDSL SDLKDKRETI KQNKNLGAKL TQKSTASKSS SASKFQPNSE 900 DCRSGAKLSS VVDSDAKEPQ CNAVLVERNT TNLECLSGCS TFISPTACGT KHVDCSITVT 960 SLQYPPSSKK PQIAVEKFTP SIDADYEIFN IFADTPGIKR GLESPSSWKS PLFLNSFLTG 1020 ADFTYEDMRY FMSPGERTYD ALGLMKQLSE QNAGVIAEAQ EVLSNGGQKL NFDNVLSNNS 1080 PQGNGDSSKE QENLIPIPSN VLAEGRVLDF SGCTTPHEKT KSTKVKPLSG SSHINSQTSK 1140 TSHLLRGCR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 2e-99 | MYB family protein |