PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672393.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 424aa MW: 47334.7 Da PI: 7.1128

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113	3.2e-35	34	177	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 lp+G++F+Ptd+el+ e+L++kv+ ++ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_020672393.1 34 LPAGVKFDPTDQELI-EHLEAKVSCQSsmrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtevdvqR 126 799**********.99**99977765543333333766646******.555666799**************7566655433 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_020672393.1 127 GETRWHKTGKTRPVTA-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 177 3778********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MSRSNIEEHQ IMSGSKQCPS CGHKLDRKPD WLGLPAGVKF DPTDQELIEH LEAKVSCQSS 60 MRSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT GTRKRRKIQT 120 EVDVQRGETR WHKTGKTRPV TANGKQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGEL 180 EEEKEGELVV SKIFYQTQPR QCSWSSERSG AGGKDSGNGS GSCSSTKEVV SEKREELGSV 240 AAVAAAAAAV AGMAVYSTGM EQLQQTDSFS FAPFRKSFDE VGIGEAAATH STEGSMGREE 300 REEREHHHHQ RHQSAAVVAA AASAFDISRP SNPISAILHQ NTMVLDDPYH VSRILLQDKF 360 EQQQQQRQQQ QQKLAERSAG AGLEDLIMGC TSTDIKAETS ISQPQETEWL KYSYWSPDSH 420 DHHG

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MSRSNIEEHQ IMSGSKQCPS CGHKLDRKPD WLGLPAGVKF DPTDQELIEH LEAKVSCQSS  60
MRSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT GTRKRRKIQT  120
EVDVQRGETR WHKTGKTRPV TANGKQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGEL  180
EEEKEGELVV SKIFYQTQPR QCSWSSERSG AGGKDSGNGS GSCSSTKEVV SEKREELGSV  240
AAVAAAAAAV AGMAVYSTGM EQLQQTDSFS FAPFRKSFDE VGIGEAAATH STEGSMGREE  300
REEREHHHHQ RHQSAAVVAA AASAFDISRP SNPISAILHQ NTMVLDDPYH VSRILLQDKF  360
EQQQQQRQQQ QQKLAERSAG AGLEDLIMGC TSTDIKAETS ISQPQETEWL KYSYWSPDSH  420
DHHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-114	NAC family protein