PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672353.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 343aa MW: 37633.7 Da PI: 8.3715

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.7e-11	23	49	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t CkyG +CkF+H++ XP_020672353.1 23 PGEPDCPYFLKTQKCKYGLNCKFNHPK 49 5789*********************96 PP
2	zf-CCCH	36.1	1.1e-11	76	100	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+a+tG Ck+G++CkF+H++ XP_020672353.1 76 EPVCAFYAKTGKCKFGGNCKFHHPK 100 789********************96 PP
3	zf-CCCH	37.2	4.8e-12	156	180	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_020672353.1 156 GETDCPFYLKTGSCKYGATCRYSHP 180 6789********************9 PP
4	zf-CCCH	35.5	1.6e-11	240	263	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+ +rC+F+H+ XP_020672353.1 240 EIECDYYMKTGQCKFAERCRFHHP 263 568********************8 PP
5	zf-CCCH	38.4	2e-12	295	318	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG+ C+F H+p XP_020672353.1 295 VACPFYMKTGTCKYGAMCRFDHPP 318 78********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MWDRRGPLKV PHNPAPESLP ERPGEPDCPY FLKTQKCKYG LNCKFNHPKE KLDSSTGVVQ 60 SNEIYANSEL PERPSEPVCA FYAKTGKCKF GGNCKFHHPK DTLIQSAGKD IGSAANNEPT 120 TNNDNATNGY SKQTKTFIPF TPALWHNSKG LPIRPGETDC PFYLKTGSCK YGATCRYSHP 180 DRYLISTPVT ANINNAIITP PVATVPVGVI NPAASFLPSL DPRLSQFGVG AAIYPQRPGE 240 IECDYYMKTG QCKFAERCRF HHPIDRSAPI ASVNKQAQQA VKLSLAGLPR REGSVACPFY 300 MKTGTCKYGA MCRFDHPPPG EAIAMSTIQE SGEVEKDEAE IGQ

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MWDRRGPLKV PHNPAPESLP ERPGEPDCPY FLKTQKCKYG LNCKFNHPKE KLDSSTGVVQ  60
SNEIYANSEL PERPSEPVCA FYAKTGKCKF GGNCKFHHPK DTLIQSAGKD IGSAANNEPT  120
TNNDNATNGY SKQTKTFIPF TPALWHNSKG LPIRPGETDC PFYLKTGSCK YGATCRYSHP  180
DRYLISTPVT ANINNAIITP PVATVPVGVI NPAASFLPSL DPRLSQFGVG AAIYPQRPGE  240
IECDYYMKTG QCKFAERCRF HHPIDRSAPI ASVNKQAQQA VKLSLAGLPR REGSVACPFY  300
MKTGTCKYGA MCRFDHPPPG EAIAMSTIQE SGEVEKDEAE IGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-125	C3H family protein