PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020672352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 524aa MW: 56697 Da PI: 8.1547 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.2e-11 | 153 | 177 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd CkF H+ XP_020672352.1 153 GEKDCAYYMMTRTCKFGDACKFDHP 177 7889********************8 PP | |||||||
2 | zf-CCCH | 34.7 | 2.9e-11 | 204 | 230 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t CkyG +CkF+H++ XP_020672352.1 204 PGEPDCPYFLKTQKCKYGLNCKFNHPK 230 5789*********************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.8e-11 | 257 | 281 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+a+tG Ck+G++CkF+H++ XP_020672352.1 257 EPVCAFYAKTGKCKFGGNCKFHHPK 281 789********************96 PP | |||||||
4 | zf-CCCH | 36.5 | 8e-12 | 337 | 361 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_020672352.1 337 GETDCPFYLKTGSCKYGATCRYSHP 361 6789********************9 PP | |||||||
5 | zf-CCCH | 34.8 | 2.7e-11 | 421 | 444 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+ +rC+F+H+ XP_020672352.1 421 EIECDYYMKTGQCKFAERCRFHHP 444 568********************8 PP | |||||||
6 | zf-CCCH | 37.7 | 3.4e-12 | 476 | 499 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG+ C+F H+p XP_020672352.1 476 VACPFYMKTGTCKYGAMCRFDHPP 499 68********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence |
MSNQIYYGST YTSGGVGGYT LRAADPYLPS AIGSSRYSTD GFAIADVGER TSSLSSSQTN 60 GLKLSSVEIR GVGGGGSYSL GKIGGAPTSM SWLGVDGLSD VGSKRSAEAL YNQSILAYNT 120 IGQSDALLSK YSLVKRPRVV SASHLPLYPE RPGEKDCAYY MMTRTCKFGD ACKFDHPIWV 180 PEGGIPDWKE VPHNPAPESL PERPGEPDCP YFLKTQKCKY GLNCKFNHPK EKLDSSTGVV 240 QSNEIYANSE LPERPSEPVC AFYAKTGKCK FGGNCKFHHP KDTLIQSAGK DIGSAANNEP 300 TTNNDNATNG YSKQTKTFIP FTPALWHNSK GLPIRPGETD CPFYLKTGSC KYGATCRYSH 360 PDRYLISTPV TANINNAIIT PPVATVPVGV INPAASFLPS LDPRLSQFGV GAAIYPQRPG 420 EIECDYYMKT GQCKFAERCR FHHPIDRSAP IASVNKQAQQ AVKLSLAGLP RREGSVACPF 480 YMKTGTCKYG AMCRFDHPPP GEAIAMSTIQ ESGEVEKDEA EIGQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-174 | C3H family protein |