PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672053.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-X1

Protein Properties

Length: 892aa MW: 98556.7 Da PI: 8.4093

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.9	1.4e-05	187	205	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG HkC lCH+G CppCp+ XP_020672053.1 187 CG-HKCLLLCHPGVCPPCPK 205 .*************96 PP
2	zf-NF-X1	18	6.2e-06	292	311	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CGkHkC++ CH GpC+ Cp+ XP_020672053.1 292 CGKHKCSRGCHSGPCGACPL 311 ******************95 PP
3	zf-NF-X1	18.1	5.7e-06	420	445	1	20
zf-NF-X1 1 CG......kHkCqklCHeGpCppCpq 20 CG +HkC +lCH+G C pCp+ XP_020672053.1 420 CGrklrcnNHKCPSLCHRGSCAPCPL 445 666666669***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence
MATAAASVLS PSSANPAPSV SDSDTGSSSS GDEAAGISGA SALEDSIFAA YLQICGGHSP 60 SHDLIKIRSF LSAAAGRGGH FVSCLICLER IRPSDPIWSC SSGCHALFHL PCIQNWANQC 120 SYRHSSSSSL HSTPDWHCPK CRDLYARDKI PRSYRCFCGK VEDPPSDPWI LPHSCGEVCG 180 RPLRGNCGHK CLLLCHPGVC PPCPKLITAR CFCGSRKDAR RCAQKHFSCN QSCPTFLPCR 240 LHSCTERCHD GRCPPCQVKA FYKCACGKTE EERVCAESDF RCDRPCDGIL KCGKHKCSRG 300 CHSGPCGACP LQGRRTCPCG KKEYKGASCD EDVPTCGLTC EKMLSCGLHR CPERCHRGIC 360 VETCRIVVFK ACRCGSLRKE VPCYQELTCE RKCLRMRDCG RHACKHRCCD GECPPCQEIC 420 GRKLRCNNHK CPSLCHRGSC APCPLMVTIS CFCGETYFEV PCGVEKNQRP LKCPKTCHVS 480 RLCRHQSQCR PHKCHYGACP PCRIICGEEL SCGHICKHRC HGPIPPPNPE FTLKPKKKKM 540 EKNIGVTPGS ACPSCQEIIW VACLGQHLGE ERPMVCSKTS QFSCNSLCGN LLACGNHYCT 600 KSCHAVKYQP SSSDGHGSYK DDLAQKHGPS LLNAGSDHAE SCEECLLPCQ KVREPACSHP 660 CPLPCHSDCC PPCEVLLKRS CHCGAMVHVF NCANYNRLTV EEQQLTRSCR GPCHRKLPNC 720 PHLCSDICHP GQCPSINLCS KKVTVRCACN SLKKEWLCRD VQNLYRQTDR DPKDVVKSLF 780 GIGLIPCNAD CKSKVKVADA ELQIQKVPVP KGIDVVAAAV TKRRKRRERI QVTKQVSKFQ 840 AFRSILQRCL LFTLILIVIC ASLCYGYKAL FWLSDRMYEI ERRKVKKGLS KF

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence

MATAAASVLS PSSANPAPSV SDSDTGSSSS GDEAAGISGA SALEDSIFAA YLQICGGHSP  60
SHDLIKIRSF LSAAAGRGGH FVSCLICLER IRPSDPIWSC SSGCHALFHL PCIQNWANQC  120
SYRHSSSSSL HSTPDWHCPK CRDLYARDKI PRSYRCFCGK VEDPPSDPWI LPHSCGEVCG  180
RPLRGNCGHK CLLLCHPGVC PPCPKLITAR CFCGSRKDAR RCAQKHFSCN QSCPTFLPCR  240
LHSCTERCHD GRCPPCQVKA FYKCACGKTE EERVCAESDF RCDRPCDGIL KCGKHKCSRG  300
CHSGPCGACP LQGRRTCPCG KKEYKGASCD EDVPTCGLTC EKMLSCGLHR CPERCHRGIC  360
VETCRIVVFK ACRCGSLRKE VPCYQELTCE RKCLRMRDCG RHACKHRCCD GECPPCQEIC  420
GRKLRCNNHK CPSLCHRGSC APCPLMVTIS CFCGETYFEV PCGVEKNQRP LKCPKTCHVS  480
RLCRHQSQCR PHKCHYGACP PCRIICGEEL SCGHICKHRC HGPIPPPNPE FTLKPKKKKM  540
EKNIGVTPGS ACPSCQEIIW VACLGQHLGE ERPMVCSKTS QFSCNSLCGN LLACGNHYCT  600
KSCHAVKYQP SSSDGHGSYK DDLAQKHGPS LLNAGSDHAE SCEECLLPCQ KVREPACSHP  660
CPLPCHSDCC PPCEVLLKRS CHCGAMVHVF NCANYNRLTV EEQQLTRSCR GPCHRKLPNC  720
PHLCSDICHP GQCPSINLCS KKVTVRCACN SLKKEWLCRD VQNLYRQTDR DPKDVVKSLF  780
GIGLIPCNAD CKSKVKVADA ELQIQKVPVP KGIDVVAAAV TKRRKRRERI QVTKQVSKFQ  840
AFRSILQRCL LFTLILIVIC ASLCYGYKAL FWLSDRMYEI ERRKVKKGLS KF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein