PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020671903.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HSF
Protein Properties Length: 285aa    MW: 31936.7 Da    PI: 8.0862
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020671903.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35241162103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+e++++isw e+g sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+++ll+ 
  XP_020671903.2  24 FLTKTYQMVEDRETEDVISWGEKGVSFVVWKPVEFARDLLPVHFKHNNFSSFVRQLNTYGFRKVVADR---------WEFANDNFRQGEQTLLSF 109
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  XP_020671903.2 110 IRRRKSS 116
                     ****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MVMGSKGKRL EEGGGRSVGS PAPFLTKTYQ MVEDRETEDV ISWGEKGVSF VVWKPVEFAR  60
DLLPVHFKHN NFSSFVRQLN TYGFRKVVAD RWEFANDNFR QGEQTLLSFI RRRKSSSNRQ  120
PPPSSNSGQH STEIHSSSSA SSPPPPSPRL LNLSSENEKL RRENKILNSE LAQAKRHCDE  180
LLGFLSKYVD VGQLDLGLLR NRSVEFDEGE EVVSEEEEEV DEGEKETSFK LFGVLLKVNV  240
SCDEVQRSTK RRRCQGGGGR MPVVRGSWAD ALSPVGGSSN VSQRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-50HSF family protein