PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020671813.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 532aa MW: 58208 Da PI: 5.9497

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020671813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.7e-18	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed ll+ +v+++G g+W+++ r+ g+ R++k+c++rw ++l XP_020671813.1 42 KGPWTTAEDALLISYVQKHGEGNWNAVQRHSGLLRCGKSCRLRWANHL 89 79****************************99********9986 PP
2	Myb_DNA-binding	48.2	2.5e-15	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++TteE++ +++ + ++G++ W++ a+ ++ gRt++++k++w++ XP_020671813.1 95 KGAFTTEEEQFIIQMHSKMGNR-WARMAALLP-GRTDNEIKNYWNT 138 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MSCSENDGNI LMVSKEQLES SSTDEGSCSG SSTGGGTVNL KKGPWTTAED ALLISYVQKH 60 GEGNWNAVQR HSGLLRCGKS CRLRWANHLR PHLKKGAFTT EEEQFIIQMH SKMGNRWARM 120 AALLPGRTDN EIKNYWNTRV KRRSRAGLPL YPTKVNLQTS DENQLIQSAT ELSSGNQQNI 180 GILPGTINGT LELRFLPHKA NPGPPPYPPH FSDIPVTAMP SHGLGYYTRS FLNPQGDHAK 240 QTWESETSFP GCHFGLNSMV PAFEDLSSLN SEPVYLNSGI GYPHDPDPES KKNLASFICP 300 IPGNHALSNG NFSSSRLLPG AVKMELPSLQ STEADYNDWN TSASLFTSSY DAVDSYIQSP 360 ENVSVQSDCA SPKNKGLLED LVQESKAISI GKKQSLEKSF DDTMTGSSTV KLEEIRDPTS 420 PFCQSAVSLF NECNPINRST YNESSTFKAP MGSAKQDKCA PNLPDFLRPD VLLGSGWFIG 480 NSRSAIDSIS GPLDENLRED LVPGPAGISS MASLESYPWT NMPRVCQMSE LQ

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MSCSENDGNI LMVSKEQLES SSTDEGSCSG SSTGGGTVNL KKGPWTTAED ALLISYVQKH  60
GEGNWNAVQR HSGLLRCGKS CRLRWANHLR PHLKKGAFTT EEEQFIIQMH SKMGNRWARM  120
AALLPGRTDN EIKNYWNTRV KRRSRAGLPL YPTKVNLQTS DENQLIQSAT ELSSGNQQNI  180
GILPGTINGT LELRFLPHKA NPGPPPYPPH FSDIPVTAMP SHGLGYYTRS FLNPQGDHAK  240
QTWESETSFP GCHFGLNSMV PAFEDLSSLN SEPVYLNSGI GYPHDPDPES KKNLASFICP  300
IPGNHALSNG NFSSSRLLPG AVKMELPSLQ STEADYNDWN TSASLFTSSY DAVDSYIQSP  360
ENVSVQSDCA SPKNKGLLED LVQESKAISI GKKQSLEKSF DDTMTGSSTV KLEEIRDPTS  420
PFCQSAVSLF NECNPINRST YNESSTFKAP MGSAKQDKCA PNLPDFLRPD VLLGSGWFIG  480
NSRSAIDSIS GPLDENLRED LVPGPAGISS MASLESYPWT NMPRVCQMSE LQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	3e-96	MYB family protein