PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020671769.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 633aa MW: 70914 Da PI: 8.1203

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020671769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	2e-23	112	213	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + ++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF +++ XP_020671769.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--EVLAKDVHGKIWKFRHIYRGTPRRHLLTTGWSNFVNEKKLVAGDSIVFL--RTK 202 89**************************996555555..8**********************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+++++r+ XP_020671769.1 203 NGDLCMGIRRA 213 88889999997 PP
2	Auxin_resp	111	1.2e-36	276	358	2	83
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++ a ++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafet+dss++++ +Gtv++ + +dp+rWp+S+Wr+L+ XP_020671769.1 276 ITLAVNGQPFEVVYYPRASTPEFCVKASAVKAAVRIQWCTGMRFKMAFETDDSSRISWfTGTVSDSHVSDPTRWPGSPWRLLQ 358 677889***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MMNDNDLDSQ LWHACAGAMV QMPLINSKVF YFPQGHAEHA QSPVDFGNSL RIPPLILCRV 60 NYVKYMADSE TDEVYAKIFM TPLRGIELDY CEDDELTLGS NGSESQEKPS SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSADPPVQ EVLAKDVHGK IWKFRHIYRG TPRRHLLTTG 180 WSNFVNEKKL VAGDSIVFLR TKNGDLCMGI RRANRGFGNG FESPISWDHP MGKCMYEGLS 240 ILLREEESKF IRGNTHGDSN MRPRGKVKAC TVIEAITLAV NGQPFEVVYY PRASTPEFCV 300 KASAVKAAVR IQWCTGMRFK MAFETDDSSR ISWFTGTVSD SHVSDPTRWP GSPWRLLQVS 360 WDEPDLLQNV TSVSPWLVEL ISNMTTINLA HLSPPRKKTR SSQLSDFPLD AQLPTSIIPK 420 NLLTPSSSPL CFLPDNTPAA GIQGARHSQY GLSLPELRFF HGLDHFPPPS RISTGINGGD 480 NSCMLTIENS QKGNKECKKR QFMLFGKVIL TAEELSTINK YSPSGLNSMK MMSDNSSSEA 540 LYLNKDKKVN ELGLETGHCK VIMESENVGR NLDLSTFGSY EELYRLANMF GIRKSELASR 600 LLYRDPAGVL KRTEDKPFVE FMKGARKLTI IMK

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MMNDNDLDSQ LWHACAGAMV QMPLINSKVF YFPQGHAEHA QSPVDFGNSL RIPPLILCRV  60
NYVKYMADSE TDEVYAKIFM TPLRGIELDY CEDDELTLGS NGSESQEKPS SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ EVLAKDVHGK IWKFRHIYRG TPRRHLLTTG  180
WSNFVNEKKL VAGDSIVFLR TKNGDLCMGI RRANRGFGNG FESPISWDHP MGKCMYEGLS  240
ILLREEESKF IRGNTHGDSN MRPRGKVKAC TVIEAITLAV NGQPFEVVYY PRASTPEFCV  300
KASAVKAAVR IQWCTGMRFK MAFETDDSSR ISWFTGTVSD SHVSDPTRWP GSPWRLLQVS  360
WDEPDLLQNV TSVSPWLVEL ISNMTTINLA HLSPPRKKTR SSQLSDFPLD AQLPTSIIPK  420
NLLTPSSSPL CFLPDNTPAA GIQGARHSQY GLSLPELRFF HGLDHFPPPS RISTGINGGD  480
NSCMLTIENS QKGNKECKKR QFMLFGKVIL TAEELSTINK YSPSGLNSMK MMSDNSSSEA  540
LYLNKDKKVN ELGLETGHCK VIMESENVGR NLDLSTFGSY EELYRLANMF GIRKSELASR  600
LLYRDPAGVL KRTEDKPFVE FMKGARKLTI IMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein