PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020671760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22592.5 Da PI: 4.8665 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.6 | 1.2e-11 | 15 | 51 | 7 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 s r t+ R +gi KKA+ELSvLC+++v+ fs++ XP_020671760.1 15 SARINTYKSRIKGIEKKAKELSVLCGVDVLFCSFSPD 51 567789*************************999998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MGRAKLQIRY REKPSARINT YKSRIKGIEK KAKELSVLCG VDVLFCSFSP DLSAFHYWPN 60 EPSEFHRIID RFKSISSQKP QCEVPSPPVN WSSQEELAAI NKKLEDVRQM KKFLEAEKMG 120 YSSQKCRADS IGADGDFCPN AAILKDEEDI FSLLEELGQD LFISDLPSNS SIDVFKESYF 180 DCRDNFFDAD PADFQFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-12 | M-type_MADS family protein |